Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2871
Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/5-30 mM) |
---|---|---|---|---|---|
remove | |||||
2,964,385 | + | DVU2869 | 0.47 | +0.9 | |
2,965,486 | - | DVU2871 | 0.13 | -0.7 | |
2,965,493 | - | DVU2871 | 0.13 | -0.3 | |
2,965,826 | + | DVU2871 | 0.38 | -0.0 | |
2,966,004 | + | DVU2871 | 0.52 | +0.1 | |
2,966,165 | + | DVU2871 | 0.64 | +1.0 | |
2,966,198 | - | DVU2871 | 0.67 | +0.8 | |
2,966,198 | - | DVU2871 | 0.67 | -0.7 | |
2,966,198 | - | DVU2871 | 0.67 | +0.8 | |
2,966,198 | - | DVU2871 | 0.67 | +0.0 | |
2,966,517 | + | +0.0 | |||
2,966,526 | + | -2.7 | |||
2,966,542 | - | -0.3 | |||
2,966,950 | + | DVU2872 | 0.19 | -0.3 | |
2,967,007 | - | DVU2872 | 0.23 | -1.6 | |
2,967,477 | - | DVU2872 | 0.50 | -0.1 | |
2,967,505 | - | DVU2872 | 0.52 | -0.3 | |
2,967,516 | - | DVU2872 | 0.53 | -0.4 | |
2,967,547 | - | DVU2872 | 0.54 | +0.4 | |
2,967,567 | - | DVU2872 | 0.56 | +1.1 |
Or see this region's nucleotide sequence