Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2867

Experiment: Formate/Acetate-Sulfate (60/5-30 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2865 and DVU2866 are separated by 17 nucleotidesDVU2866 and DVU2867 are separated by 20 nucleotidesDVU2867 and DVU2868 are separated by 2 nucleotidesDVU2868 and DVU2869 are separated by 8 nucleotides DVU2865: DVU2865 - lipoprotein, putative (TIGR), at 2,962,066 to 2,962,476 DVU2865 DVU2866: DVU2866 - conserved hypothetical protein (TIGR), at 2,962,494 to 2,963,042 DVU2866 DVU2867: DVU2867 - holin (TIGR), at 2,963,063 to 2,963,551 DVU2867 DVU2868: DVU2868 - hypothetical protein (TIGR), at 2,963,554 to 2,963,901 DVU2868 DVU2869: DVU2869 - major head protein (TIGR), at 2,963,910 to 2,964,914 DVU2869 Position (kb) 2963 2964Strain fitness (log2 ratio) -1 0 1at 2962.226 kb on + strand, within DVU2865at 2962.499 kb on - strandat 2962.918 kb on + strand, within DVU2866at 2962.960 kb on - strand, within DVU2866at 2962.960 kb on - strand, within DVU2866at 2962.960 kb on - strand, within DVU2866at 2963.335 kb on + strand, within DVU2867at 2963.627 kb on - strand, within DVU2868at 2964.385 kb on + strand, within DVU2869

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM)
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2,962,226 + DVU2865 0.39 +0.1
2,962,499 - -0.7
2,962,918 + DVU2866 0.77 +0.0
2,962,960 - DVU2866 0.85 +0.0
2,962,960 - DVU2866 0.85 +0.8
2,962,960 - DVU2866 0.85 +0.1
2,963,335 + DVU2867 0.56 +0.9
2,963,627 - DVU2868 0.21 -0.2
2,964,385 + DVU2869 0.47 +0.9

Or see this region's nucleotide sequence