Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2860 and DVU2861 overlap by 17 nucleotides DVU2861 and DVU2862 overlap by 4 nucleotides DVU2862 and DVU2863 overlap by 4 nucleotides DVU2863 and DVU2864 are separated by 2 nucleotides DVU2864 and DVU2865 are separated by 16 nucleotides DVU2865 and DVU2866 are separated by 17 nucleotides
DVU2860: DVU2860 - conserved hypothetical protein (TIGR), at 2,960,258 to 2,960,449
DVU2860
DVU2861: DVU2861 - hypothetical protein (TIGR), at 2,960,433 to 2,960,990
DVU2861
DVU2862: DVU2862 - hypothetical protein (TIGR), at 2,960,987 to 2,961,313
DVU2862
DVU2863: DVU2863 - hypothetical protein (TIGR), at 2,961,310 to 2,961,903
DVU2863
DVU2864: DVU2864 - hypothetical protein (TIGR), at 2,961,906 to 2,962,049
DVU2864
DVU2865: DVU2865 - lipoprotein, putative (TIGR), at 2,962,066 to 2,962,476
DVU2865
DVU2866: DVU2866 - conserved hypothetical protein (TIGR), at 2,962,494 to 2,963,042
DVU2866
Position (kb)
2961
2962 Strain fitness (log2 ratio)
-1
0
1 at 2960.703 kb on + strand, within DVU2861 at 2960.925 kb on - strand, within DVU2861 at 2960.925 kb on - strand, within DVU2861 at 2961.473 kb on - strand, within DVU2863 at 2961.473 kb on - strand, within DVU2863 at 2961.978 kb on + strand, within DVU2864 at 2961.978 kb on + strand, within DVU2864 at 2961.993 kb on + strand, within DVU2864 at 2962.226 kb on + strand, within DVU2865 at 2962.499 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 2,960,703 + DVU2861 0.48 -0.1 2,960,925 - DVU2861 0.88 -0.1 2,960,925 - DVU2861 0.88 -0.2 2,961,473 - DVU2863 0.27 -0.7 2,961,473 - DVU2863 0.27 +0.1 2,961,978 + DVU2864 0.50 -0.4 2,961,978 + DVU2864 0.50 -0.4 2,961,993 + DVU2864 0.60 -0.4 2,962,226 + DVU2865 0.39 +0.1 2,962,499 - -0.7
Or see this region's nucleotide sequence