Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2848 and stfE are separated by 9 nucleotides stfE and DVU2850 overlap by 8 nucleotides DVU2850 and DVU2851 are separated by 8 nucleotides
DVU2848: DVU2848 - tail fiber assembly protein, putative (TIGR), at 2,949,782 to 2,950,321
DVU2848
DVU2849: stfE - tail fiber protein, putative (TIGR), at 2,950,331 to 2,951,146
stfE
DVU2850: DVU2850 - tail protein, putative (TIGR), at 2,951,139 to 2,951,765
DVU2850
DVU2851: DVU2851 - tail protein, putative (TIGR), at 2,951,774 to 2,952,835
DVU2851
Position (kb)
2951
2952 Strain fitness (log2 ratio)
-1
0
1 at 2950.172 kb on + strand, within DVU2848 at 2950.172 kb on + strand, within DVU2848 at 2950.386 kb on + strand at 2950.414 kb on - strand, within stfE at 2950.414 kb on - strand, within stfE at 2950.512 kb on - strand, within stfE at 2950.522 kb on - strand, within stfE at 2950.522 kb on - strand, within stfE at 2950.640 kb on - strand, within stfE at 2950.701 kb on + strand, within stfE at 2950.702 kb on - strand, within stfE at 2950.724 kb on + strand, within stfE at 2950.729 kb on + strand, within stfE at 2950.759 kb on + strand, within stfE at 2951.019 kb on + strand, within stfE at 2951.034 kb on - strand, within stfE at 2951.040 kb on + strand, within stfE at 2951.416 kb on + strand, within DVU2850 at 2951.443 kb on + strand, within DVU2850 at 2951.472 kb on + strand, within DVU2850 at 2951.652 kb on - strand, within DVU2850 at 2951.779 kb on - strand at 2951.779 kb on - strand at 2951.846 kb on + strand at 2952.191 kb on - strand, within DVU2851 at 2952.191 kb on - strand, within DVU2851 at 2952.359 kb on + strand, within DVU2851 at 2952.540 kb on + strand, within DVU2851 at 2952.540 kb on + strand, within DVU2851 at 2952.543 kb on - strand, within DVU2851 at 2952.543 kb on - strand, within DVU2851 at 2952.548 kb on - strand, within DVU2851 at 2952.603 kb on + strand, within DVU2851
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 2,950,172 + DVU2848 0.72 -0.7 2,950,172 + DVU2848 0.72 -0.0 2,950,386 + +0.1 2,950,414 - stfE DVU2849 0.10 -0.4 2,950,414 - stfE DVU2849 0.10 -0.3 2,950,512 - stfE DVU2849 0.22 +0.3 2,950,522 - stfE DVU2849 0.23 -0.1 2,950,522 - stfE DVU2849 0.23 -1.3 2,950,640 - stfE DVU2849 0.38 -0.3 2,950,701 + stfE DVU2849 0.45 +1.0 2,950,702 - stfE DVU2849 0.45 -0.6 2,950,724 + stfE DVU2849 0.48 +0.6 2,950,729 + stfE DVU2849 0.49 -0.5 2,950,759 + stfE DVU2849 0.52 -0.2 2,951,019 + stfE DVU2849 0.84 -0.5 2,951,034 - stfE DVU2849 0.86 -0.5 2,951,040 + stfE DVU2849 0.87 +1.3 2,951,416 + DVU2850 0.44 -0.7 2,951,443 + DVU2850 0.48 -1.1 2,951,472 + DVU2850 0.53 +0.5 2,951,652 - DVU2850 0.82 +1.1 2,951,779 - -0.2 2,951,779 - -0.0 2,951,846 + +0.9 2,952,191 - DVU2851 0.39 +0.2 2,952,191 - DVU2851 0.39 -0.6 2,952,359 + DVU2851 0.55 -0.2 2,952,540 + DVU2851 0.72 -0.5 2,952,540 + DVU2851 0.72 -0.2 2,952,543 - DVU2851 0.72 -0.3 2,952,543 - DVU2851 0.72 -1.1 2,952,548 - DVU2851 0.73 -0.1 2,952,603 + DVU2851 0.78 -0.1
Or see this region's nucleotide sequence