Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt slt and DVU2700 overlap by 8 nucleotides DVU2700 and DVU2701 are separated by 28 nucleotides DVU2701 and DVU2702 are separated by 3 nucleotides DVU2702 and DVU2703 overlap by 14 nucleotides DVU2703 and DVU2704 are separated by 1 nucleotides DVU2704 and DVU2705 overlap by 4 nucleotides
DVU2699: slt - transglycosylase SLT domain protein (TIGR), at 2,808,534 to 2,809,181
slt
DVU2700: DVU2700 - hypothetical protein (TIGR), at 2,809,174 to 2,809,593
DVU2700
DVU2701: DVU2701 - hypothetical protein (TIGR), at 2,809,622 to 2,809,840
DVU2701
DVU2702: DVU2702 - conserved hypothetical protein (TIGR), at 2,809,844 to 2,810,125
DVU2702
DVU2703: DVU2703 - hypothetical protein (TIGR), at 2,810,112 to 2,810,327
DVU2703
DVU2704: DVU2704 - conserved hypothetical protein (TIGR), at 2,810,329 to 2,810,847
DVU2704
DVU2705: DVU2705 - phage uncharacterized protein (TIGR), at 2,810,844 to 2,812,520
DVU2705
Position (kb)
2810
2811 Strain fitness (log2 ratio)
-2
-1
0
1 at 2809.208 kb on + strand at 2809.234 kb on - strand, within DVU2700 at 2809.318 kb on + strand, within DVU2700 at 2809.320 kb on + strand, within DVU2700 at 2809.326 kb on - strand, within DVU2700 at 2809.326 kb on - strand, within DVU2700 at 2809.333 kb on - strand, within DVU2700 at 2809.340 kb on - strand, within DVU2700 at 2809.344 kb on + strand, within DVU2700 at 2809.344 kb on + strand, within DVU2700 at 2809.344 kb on + strand, within DVU2700 at 2809.352 kb on - strand, within DVU2700 at 2809.392 kb on + strand, within DVU2700 at 2809.406 kb on - strand, within DVU2700 at 2809.489 kb on - strand, within DVU2700 at 2809.505 kb on - strand, within DVU2700 at 2809.637 kb on + strand at 2809.637 kb on + strand at 2809.832 kb on - strand at 2809.874 kb on - strand, within DVU2702 at 2809.904 kb on + strand, within DVU2702 at 2809.937 kb on + strand, within DVU2702 at 2809.947 kb on + strand, within DVU2702 at 2809.985 kb on - strand, within DVU2702 at 2809.991 kb on - strand, within DVU2702 at 2810.021 kb on - strand, within DVU2702 at 2810.038 kb on + strand, within DVU2702 at 2810.067 kb on - strand, within DVU2702 at 2810.084 kb on + strand, within DVU2702 at 2810.092 kb on - strand, within DVU2702 at 2810.212 kb on + strand, within DVU2703 at 2810.303 kb on + strand, within DVU2703 at 2810.375 kb on + strand at 2810.383 kb on - strand, within DVU2704 at 2810.505 kb on + strand, within DVU2704 at 2810.562 kb on + strand, within DVU2704 at 2810.570 kb on - strand, within DVU2704 at 2810.576 kb on + strand, within DVU2704 at 2810.681 kb on + strand, within DVU2704 at 2810.720 kb on + strand, within DVU2704 at 2810.787 kb on + strand, within DVU2704 at 2810.787 kb on + strand, within DVU2704 at 2810.795 kb on - strand, within DVU2704 at 2810.804 kb on - strand at 2810.811 kb on - strand at 2810.843 kb on + strand at 2810.900 kb on + strand at 2810.915 kb on - strand at 2811.024 kb on - strand, within DVU2705 at 2811.069 kb on + strand, within DVU2705 at 2811.069 kb on + strand, within DVU2705 at 2811.077 kb on - strand, within DVU2705 at 2811.077 kb on - strand, within DVU2705 at 2811.110 kb on + strand, within DVU2705 at 2811.197 kb on - strand, within DVU2705 at 2811.252 kb on - strand, within DVU2705 at 2811.252 kb on - strand, within DVU2705 at 2811.309 kb on + strand, within DVU2705
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 2,809,208 + +1.3 2,809,234 - DVU2700 0.14 -0.2 2,809,318 + DVU2700 0.34 +0.1 2,809,320 + DVU2700 0.35 +0.4 2,809,326 - DVU2700 0.36 -0.2 2,809,326 - DVU2700 0.36 -0.4 2,809,333 - DVU2700 0.38 -0.2 2,809,340 - DVU2700 0.40 -0.9 2,809,344 + DVU2700 0.40 +0.2 2,809,344 + DVU2700 0.40 +0.5 2,809,344 + DVU2700 0.40 -0.8 2,809,352 - DVU2700 0.42 -0.3 2,809,392 + DVU2700 0.52 +0.3 2,809,406 - DVU2700 0.55 +0.6 2,809,489 - DVU2700 0.75 +0.5 2,809,505 - DVU2700 0.79 -0.4 2,809,637 + -0.0 2,809,637 + -0.1 2,809,832 - -0.4 2,809,874 - DVU2702 0.11 -1.4 2,809,904 + DVU2702 0.21 -0.6 2,809,937 + DVU2702 0.33 +1.0 2,809,947 + DVU2702 0.37 -0.3 2,809,985 - DVU2702 0.50 +0.2 2,809,991 - DVU2702 0.52 +0.3 2,810,021 - DVU2702 0.63 -0.3 2,810,038 + DVU2702 0.69 -0.5 2,810,067 - DVU2702 0.79 -0.1 2,810,084 + DVU2702 0.85 -0.1 2,810,092 - DVU2702 0.88 -0.1 2,810,212 + DVU2703 0.46 +0.7 2,810,303 + DVU2703 0.88 -0.1 2,810,375 + -0.2 2,810,383 - DVU2704 0.10 +0.1 2,810,505 + DVU2704 0.34 -2.5 2,810,562 + DVU2704 0.45 -2.2 2,810,570 - DVU2704 0.46 -0.4 2,810,576 + DVU2704 0.48 +0.1 2,810,681 + DVU2704 0.68 -0.9 2,810,720 + DVU2704 0.75 -0.0 2,810,787 + DVU2704 0.88 -0.0 2,810,787 + DVU2704 0.88 +0.7 2,810,795 - DVU2704 0.90 +0.2 2,810,804 - +0.1 2,810,811 - -0.4 2,810,843 + -0.5 2,810,900 + -1.3 2,810,915 - -0.0 2,811,024 - DVU2705 0.11 +0.9 2,811,069 + DVU2705 0.13 +1.4 2,811,069 + DVU2705 0.13 -0.3 2,811,077 - DVU2705 0.14 -0.2 2,811,077 - DVU2705 0.14 -0.7 2,811,110 + DVU2705 0.16 +0.7 2,811,197 - DVU2705 0.21 -0.8 2,811,252 - DVU2705 0.24 -0.5 2,811,252 - DVU2705 0.24 -0.4 2,811,309 + DVU2705 0.28 -0.0
Or see this region's nucleotide sequence