Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2580 and cheYIV overlap by 4 nucleotides cheYIV and DVU2582 are separated by 72 nucleotides DVU2582 and DVU2583 are separated by 232 nucleotides
DVU2580: DVU2580 - response regulator (TIGR), at 2,699,014 to 2,703,135
DVU2580
DVU2581: cheYIV - response regulator (TIGR), at 2,703,132 to 2,703,572
cheYIV
DVU2582: DVU2582 - transcriptional regulator, TetR family (TIGR), at 2,703,645 to 2,704,232
DVU2582
DVU2583: DVU2583 - lipoprotein, putative (TIGR), at 2,704,465 to 2,704,971
DVU2583
Position (kb)
2703
2704
2705 Strain fitness (log2 ratio)
-1
0
1 at 2702.727 kb on + strand at 2702.790 kb on + strand at 2702.886 kb on - strand at 2703.002 kb on + strand at 2703.037 kb on - strand at 2703.116 kb on - strand at 2703.187 kb on - strand, within cheYIV at 2703.242 kb on + strand, within cheYIV at 2703.274 kb on - strand, within cheYIV at 2703.310 kb on + strand, within cheYIV at 2703.320 kb on + strand, within cheYIV at 2703.324 kb on - strand, within cheYIV at 2703.414 kb on + strand, within cheYIV at 2703.429 kb on - strand, within cheYIV at 2703.436 kb on - strand, within cheYIV at 2703.551 kb on + strand at 2703.567 kb on + strand at 2703.567 kb on + strand at 2703.655 kb on + strand at 2703.663 kb on - strand at 2703.665 kb on + strand at 2703.712 kb on + strand, within DVU2582 at 2703.720 kb on - strand, within DVU2582 at 2704.010 kb on + strand, within DVU2582 at 2704.010 kb on + strand, within DVU2582 at 2704.018 kb on - strand, within DVU2582 at 2704.019 kb on - strand, within DVU2582 at 2704.093 kb on - strand, within DVU2582 at 2704.135 kb on - strand, within DVU2582 at 2704.151 kb on + strand, within DVU2582 at 2704.184 kb on + strand at 2704.192 kb on - strand at 2704.217 kb on - strand at 2704.376 kb on + strand at 2704.402 kb on + strand at 2704.402 kb on + strand at 2704.407 kb on + strand at 2704.410 kb on - strand at 2704.434 kb on - strand at 2704.434 kb on - strand at 2704.444 kb on - strand at 2704.465 kb on - strand at 2704.622 kb on - strand, within DVU2583 at 2704.667 kb on + strand, within DVU2583 at 2704.731 kb on + strand, within DVU2583 at 2704.771 kb on - strand, within DVU2583 at 2704.771 kb on - strand, within DVU2583 at 2704.849 kb on + strand, within DVU2583 at 2704.944 kb on + strand at 2704.973 kb on - strand at 2704.978 kb on + strand at 2704.986 kb on - strand at 2705.050 kb on + strand at 2705.106 kb on - strand at 2705.176 kb on + strand at 2705.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 2,702,727 + -1.7 2,702,790 + -0.4 2,702,886 - +1.7 2,703,002 + -0.6 2,703,037 - +0.3 2,703,116 - +0.4 2,703,187 - cheYIV DVU2581 0.12 -0.4 2,703,242 + cheYIV DVU2581 0.25 -0.2 2,703,274 - cheYIV DVU2581 0.32 +0.0 2,703,310 + cheYIV DVU2581 0.40 +0.0 2,703,320 + cheYIV DVU2581 0.43 +0.5 2,703,324 - cheYIV DVU2581 0.44 -0.1 2,703,414 + cheYIV DVU2581 0.64 -0.4 2,703,429 - cheYIV DVU2581 0.67 -1.2 2,703,436 - cheYIV DVU2581 0.69 +0.5 2,703,551 + -0.5 2,703,567 + +0.3 2,703,567 + -0.2 2,703,655 + -0.2 2,703,663 - +0.6 2,703,665 + -0.3 2,703,712 + DVU2582 0.11 +0.6 2,703,720 - DVU2582 0.13 +1.0 2,704,010 + DVU2582 0.62 -0.0 2,704,010 + DVU2582 0.62 -0.7 2,704,018 - DVU2582 0.63 +1.0 2,704,019 - DVU2582 0.64 +0.4 2,704,093 - DVU2582 0.76 -0.7 2,704,135 - DVU2582 0.83 +0.1 2,704,151 + DVU2582 0.86 +0.6 2,704,184 + +0.0 2,704,192 - +0.7 2,704,217 - -0.5 2,704,376 + +0.2 2,704,402 + +0.1 2,704,402 + -0.5 2,704,407 + +0.4 2,704,410 - +0.1 2,704,434 - -0.2 2,704,434 - +0.1 2,704,444 - +0.1 2,704,465 - -0.6 2,704,622 - DVU2583 0.31 -0.1 2,704,667 + DVU2583 0.40 +0.1 2,704,731 + DVU2583 0.52 +0.0 2,704,771 - DVU2583 0.60 +0.6 2,704,771 - DVU2583 0.60 -0.3 2,704,849 + DVU2583 0.76 -1.4 2,704,944 + -0.4 2,704,973 - -0.2 2,704,978 + -0.2 2,704,986 - +0.2 2,705,050 + -0.7 2,705,106 - +0.1 2,705,176 + -0.0 2,705,204 - -0.1
Or see this region's nucleotide sequence