Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2474

Experiment: Formate/Acetate-Sulfate (60/5-30 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2472 and DVU2473 are separated by 145 nucleotidesDVU2473 and DVU2474 are separated by 7 nucleotidesDVU2474 and DVU2475 are separated by 260 nucleotides DVU2472: DVU2472 - conserved hypothetical protein (TIGR), at 2,580,029 to 2,582,368 DVU2472 DVU2473: DVU2473 - hypothetical protein (TIGR), at 2,582,514 to 2,582,657 DVU2473 DVU2474: DVU2474 - hypothetical protein (TIGR), at 2,582,665 to 2,583,147 DVU2474 DVU2475: DVU2475 - oxidoreductase, NAD-binding, putative (TIGR), at 2,583,408 to 2,584,250 DVU2475 Position (kb) 2582 2583 2584Strain fitness (log2 ratio) -2 -1 0 1 2at 2581.686 kb on - strand, within DVU2472at 2581.714 kb on - strand, within DVU2472at 2581.783 kb on + strand, within DVU2472at 2581.784 kb on - strand, within DVU2472at 2581.902 kb on + strand, within DVU2472at 2581.935 kb on - strand, within DVU2472at 2581.935 kb on - strand, within DVU2472at 2581.955 kb on + strand, within DVU2472at 2581.982 kb on + strand, within DVU2472at 2581.993 kb on + strand, within DVU2472at 2582.061 kb on + strand, within DVU2472at 2582.084 kb on + strand, within DVU2472at 2582.117 kb on + strand, within DVU2472at 2582.170 kb on - strandat 2582.190 kb on + strandat 2582.284 kb on - strandat 2582.293 kb on + strandat 2582.301 kb on - strandat 2582.330 kb on - strandat 2582.427 kb on - strandat 2582.480 kb on + strandat 2582.488 kb on - strandat 2582.493 kb on - strandat 2582.545 kb on + strand, within DVU2473at 2582.624 kb on - strand, within DVU2473at 2582.702 kb on - strandat 2582.847 kb on - strand, within DVU2474at 2582.902 kb on - strand, within DVU2474at 2583.080 kb on - strand, within DVU2474at 2583.149 kb on + strandat 2583.159 kb on - strandat 2583.193 kb on - strandat 2583.252 kb on - strandat 2583.358 kb on - strandat 2583.437 kb on + strandat 2583.509 kb on - strand, within DVU2475at 2583.549 kb on + strand, within DVU2475at 2583.557 kb on - strand, within DVU2475at 2583.666 kb on - strand, within DVU2475at 2583.676 kb on - strand, within DVU2475at 2583.704 kb on + strand, within DVU2475at 2583.711 kb on + strand, within DVU2475at 2583.711 kb on + strand, within DVU2475at 2583.711 kb on + strand, within DVU2475at 2583.730 kb on + strand, within DVU2475at 2583.752 kb on + strand, within DVU2475at 2583.825 kb on - strand, within DVU2475at 2583.859 kb on + strand, within DVU2475at 2583.996 kb on + strand, within DVU2475at 2584.004 kb on - strand, within DVU2475at 2584.009 kb on + strand, within DVU2475at 2584.017 kb on - strand, within DVU2475at 2584.039 kb on - strand, within DVU2475at 2584.041 kb on + strand, within DVU2475at 2584.074 kb on - strand, within DVU2475

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM)
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2,581,686 - DVU2472 0.71 +0.4
2,581,714 - DVU2472 0.72 -0.1
2,581,783 + DVU2472 0.75 -0.5
2,581,784 - DVU2472 0.75 +1.1
2,581,902 + DVU2472 0.80 +0.0
2,581,935 - DVU2472 0.81 -0.4
2,581,935 - DVU2472 0.81 -0.1
2,581,955 + DVU2472 0.82 -0.3
2,581,982 + DVU2472 0.83 -0.6
2,581,993 + DVU2472 0.84 -0.3
2,582,061 + DVU2472 0.87 -1.2
2,582,084 + DVU2472 0.88 -0.9
2,582,117 + DVU2472 0.89 +0.6
2,582,170 - +0.1
2,582,190 + -0.9
2,582,284 - -1.3
2,582,293 + +0.2
2,582,301 - -0.0
2,582,330 - -0.9
2,582,427 - -0.2
2,582,480 + +0.0
2,582,488 - -0.2
2,582,493 - -0.4
2,582,545 + DVU2473 0.22 -1.9
2,582,624 - DVU2473 0.76 -2.1
2,582,702 - -0.6
2,582,847 - DVU2474 0.38 +0.3
2,582,902 - DVU2474 0.49 -0.6
2,583,080 - DVU2474 0.86 +0.6
2,583,149 + -0.4
2,583,159 - -0.1
2,583,193 - +1.1
2,583,252 - -0.7
2,583,358 - -0.1
2,583,437 + +0.2
2,583,509 - DVU2475 0.12 -0.7
2,583,549 + DVU2475 0.17 +0.5
2,583,557 - DVU2475 0.18 -0.0
2,583,666 - DVU2475 0.31 +0.2
2,583,676 - DVU2475 0.32 +0.5
2,583,704 + DVU2475 0.35 +0.0
2,583,711 + DVU2475 0.36 +1.8
2,583,711 + DVU2475 0.36 +0.9
2,583,711 + DVU2475 0.36 -0.2
2,583,730 + DVU2475 0.38 +1.3
2,583,752 + DVU2475 0.41 -0.4
2,583,825 - DVU2475 0.49 -0.6
2,583,859 + DVU2475 0.53 +2.3
2,583,996 + DVU2475 0.70 -0.9
2,584,004 - DVU2475 0.71 -0.1
2,584,009 + DVU2475 0.71 +0.2
2,584,017 - DVU2475 0.72 +0.1
2,584,039 - DVU2475 0.75 +0.5
2,584,041 + DVU2475 0.75 -0.0
2,584,074 - DVU2475 0.79 +0.0

Or see this region's nucleotide sequence