Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2332
Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/5-30 mM) |
---|---|---|---|---|---|
remove | |||||
2,427,703 | - | DVU2331 | 0.54 | -0.0 | |
2,427,799 | + | DVU2331 | 0.62 | -0.1 | |
2,427,804 | + | DVU2331 | 0.63 | +0.4 | |
2,427,812 | - | DVU2331 | 0.63 | -0.3 | |
2,427,814 | + | DVU2331 | 0.63 | +0.1 | |
2,427,915 | + | DVU2331 | 0.72 | +0.2 | |
2,427,915 | + | DVU2331 | 0.72 | +0.7 | |
2,427,950 | - | DVU2331 | 0.75 | -1.1 | |
2,428,366 | - | -0.3 | |||
2,428,467 | + | +0.7 | |||
2,428,826 | - | proC | DVU2332 | 0.29 | -2.1 |
2,428,842 | - | proC | DVU2332 | 0.31 | -1.9 |
2,428,933 | + | proC | DVU2332 | 0.43 | -3.0 |
2,429,115 | + | proC | DVU2332 | 0.65 | -3.1 |
2,429,612 | + | ndk | DVU2333 | 0.53 | -0.3 |
2,429,658 | + | ndk | DVU2333 | 0.64 | -0.6 |
2,429,666 | - | ndk | DVU2333 | 0.66 | -0.2 |
2,429,666 | - | ndk | DVU2333 | 0.66 | -0.4 |
2,429,706 | + | ndk | DVU2333 | 0.75 | -0.5 |
2,429,712 | + | ndk | DVU2333 | 0.77 | +0.0 |
2,429,859 | - | -0.4 | |||
2,429,923 | + | -0.4 | |||
2,430,000 | - | -0.7 | |||
2,430,069 | - | -0.7 | |||
2,430,072 | + | +0.5 | |||
2,430,180 | + | +0.3 | |||
2,430,227 | - | -0.7 | |||
2,430,268 | - | +1.0 | |||
2,430,297 | + | +0.5 |
Or see this region's nucleotide sequence