Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2236
Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/5-30 mM) |
---|---|---|---|---|---|
remove | |||||
2,328,142 | - | DVU2234 | 0.47 | -0.3 | |
2,328,160 | - | DVU2234 | 0.48 | -0.4 | |
2,328,385 | - | DVU2234 | 0.67 | +0.1 | |
2,328,427 | + | DVU2234 | 0.71 | -1.1 | |
2,328,646 | + | DVU2234 | 0.90 | -0.4 | |
2,328,672 | - | -0.4 | |||
2,328,735 | - | -0.7 | |||
2,329,097 | - | -0.3 | |||
2,329,097 | - | +0.1 | |||
2,329,183 | + | DVU2236 | 0.86 | -0.6 | |
2,329,341 | - | -1.2 | |||
2,329,378 | + | cbiB | DVU2237 | 0.13 | -0.5 |
2,329,378 | - | cbiB | DVU2237 | 0.13 | -0.8 |
2,329,408 | + | cbiB | DVU2237 | 0.16 | -1.1 |
2,329,623 | + | cbiB | DVU2237 | 0.38 | -1.3 |
2,329,635 | + | cbiB | DVU2237 | 0.39 | +0.3 |
2,329,831 | - | cbiB | DVU2237 | 0.60 | -1.2 |
2,329,884 | - | cbiB | DVU2237 | 0.65 | -0.7 |
2,329,901 | + | cbiB | DVU2237 | 0.67 | -0.9 |
2,329,906 | - | cbiB | DVU2237 | 0.67 | -1.6 |
2,329,958 | - | cbiB | DVU2237 | 0.73 | -1.3 |
2,330,087 | - | cbiB | DVU2237 | 0.86 | -1.1 |
Or see this region's nucleotide sequence