Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1922

Experiment: Formate/Acetate-Sulfate (60/5-30 mM)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate/Acetate-Sulfate (60/5-30 mM)
1,994,823	+	hynB-1	DVU1921	0.19	-0.3
1,994,828	+	hynB-1	DVU1921	0.19	+1.0
1,994,851	+	hynB-1	DVU1921	0.22	-0.1
1,994,859	-	hynB-1	DVU1921	0.23	+0.2
1,995,072	+	hynB-1	DVU1921	0.45	+0.3
1,995,104	+	hynB-1	DVU1921	0.48	+0.2
1,995,104	+	hynB-1	DVU1921	0.48	+0.1
1,995,113	-	hynB-1	DVU1921	0.49	-0.3
1,995,159	+	hynB-1	DVU1921	0.54	-0.3
1,995,169	+	hynB-1	DVU1921	0.55	+0.7
1,995,186	-	hynB-1	DVU1921	0.57	-0.3
1,995,460	-	hynB-1	DVU1921	0.86	-0.1
1,995,499	-	hynB-1	DVU1921	0.90	-0.6
1,995,509	+				-0.2
1,995,533	+				-0.1
1,995,541	-				+0.4
1,995,670	-				+0.1
1,995,711	-				-0.1
1,995,737	-				+0.3
1,995,785	+				+0.7
1,995,793	-				-1.6
1,995,793	-				-0.1
1,995,815	+				-0.4
1,995,832	-	hynA-1	DVU1922	0.11	-0.5
1,995,866	+	hynA-1	DVU1922	0.13	+0.0
1,995,868	+	hynA-1	DVU1922	0.13	+0.0
1,995,901	-	hynA-1	DVU1922	0.15	+1.2
1,996,035	-	hynA-1	DVU1922	0.23	-0.2
1,996,085	+	hynA-1	DVU1922	0.26	+1.2
1,996,085	+	hynA-1	DVU1922	0.26	-0.1
1,996,092	+	hynA-1	DVU1922	0.26	+0.7
1,996,134	-	hynA-1	DVU1922	0.29	+0.2
1,996,150	-	hynA-1	DVU1922	0.30	-0.6
1,996,150	-	hynA-1	DVU1922	0.30	-0.4
1,996,150	-	hynA-1	DVU1922	0.30	+0.7
1,996,157	+	hynA-1	DVU1922	0.30	-0.1
1,996,165	-	hynA-1	DVU1922	0.30	+1.8
1,996,170	-	hynA-1	DVU1922	0.31	+0.3
1,996,287	-	hynA-1	DVU1922	0.38	+0.6
1,996,301	+	hynA-1	DVU1922	0.38	-0.3
1,996,309	-	hynA-1	DVU1922	0.39	+0.7
1,996,309	-	hynA-1	DVU1922	0.39	-0.3
1,996,345	+	hynA-1	DVU1922	0.41	+1.2
1,996,372	-	hynA-1	DVU1922	0.43	-0.4
1,996,404	-	hynA-1	DVU1922	0.44	-0.3
1,996,424	+	hynA-1	DVU1922	0.46	+0.3
1,996,436	+	hynA-1	DVU1922	0.46	+0.1
1,996,458	+	hynA-1	DVU1922	0.48	+0.4
1,996,499	+	hynA-1	DVU1922	0.50	-0.6
1,996,499	+	hynA-1	DVU1922	0.50	+0.1
1,996,504	+	hynA-1	DVU1922	0.50	+0.4
1,996,507	-	hynA-1	DVU1922	0.50	-0.2
1,996,509	+	hynA-1	DVU1922	0.51	+0.3
1,996,517	-	hynA-1	DVU1922	0.51	+1.5
1,996,529	+	hynA-1	DVU1922	0.52	+1.2
1,996,622	+	hynA-1	DVU1922	0.57	+1.2
1,996,630	-	hynA-1	DVU1922	0.58	-0.3
1,996,731	+	hynA-1	DVU1922	0.64	+0.0
1,996,833	-	hynA-1	DVU1922	0.70	-0.0
1,996,847	+	hynA-1	DVU1922	0.70	+0.1
1,996,855	-	hynA-1	DVU1922	0.71	-0.3
1,996,904	+	hynA-1	DVU1922	0.74	+0.0
1,996,992	-	hynA-1	DVU1922	0.79	+0.0
1,997,027	+	hynA-1	DVU1922	0.81	+0.3
1,997,194	-				-0.3
1,997,269	+				+0.9
1,997,270	-				+0.0
1,997,280	+				+0.3
1,997,295	-				+1.0
1,997,318	-				-0.4
1,997,355	+				+0.5
1,997,355	+				-0.1
1,997,355	+				-0.3
1,997,355	+				-0.2
1,997,355	+				-0.3
1,997,363	-				-0.7
1,997,363	-				-0.9
1,997,363	-				+0.9
1,997,376	-				-0.4
1,997,491	-				+0.3
1,997,554	-				-2.0
1,997,591	-				-0.1
1,997,707	-				+0.3
1,997,709	-				-0.3
1,997,731	+				-0.2
1,997,772	-	hupD	DVU1923	0.11	+0.7
1,997,779	-	hupD	DVU1923	0.12	-0.8
1,997,779	-	hupD	DVU1923	0.12	+0.3
1,997,820	-	hupD	DVU1923	0.21	-0.5
1,997,821	-	hupD	DVU1923	0.21	+0.1
1,997,888	-	hupD	DVU1923	0.34	-0.5
1,997,890	-	hupD	DVU1923	0.35	-0.3
1,997,900	-	hupD	DVU1923	0.37	-0.6
1,997,961	+	hupD	DVU1923	0.49	+0.4
1,997,969	-	hupD	DVU1923	0.51	+0.2
1,998,022	-	hupD	DVU1923	0.61	-0.1
1,998,024	+	hupD	DVU1923	0.62	+0.2
1,998,034	-	hupD	DVU1923	0.64	+0.2
1,998,121	-	hupD	DVU1923	0.81	-0.2