Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1682
Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/5-30 mM) |
---|---|---|---|---|---|
remove | |||||
1,758,920 | - | +0.7 | |||
1,758,979 | - | +0.6 | |||
1,758,979 | - | +0.4 | |||
1,759,010 | + | mreB-2 | DVU1681 | 0.13 | -0.1 |
1,759,079 | - | mreB-2 | DVU1681 | 0.20 | +0.1 |
1,759,086 | + | mreB-2 | DVU1681 | 0.20 | +0.7 |
1,759,127 | + | mreB-2 | DVU1681 | 0.24 | -0.3 |
1,759,127 | + | mreB-2 | DVU1681 | 0.24 | -0.3 |
1,759,127 | + | mreB-2 | DVU1681 | 0.24 | -0.4 |
1,759,135 | - | mreB-2 | DVU1681 | 0.25 | +0.0 |
1,759,172 | + | mreB-2 | DVU1681 | 0.29 | -1.2 |
1,759,198 | - | mreB-2 | DVU1681 | 0.31 | +0.3 |
1,759,420 | + | mreB-2 | DVU1681 | 0.53 | -0.3 |
1,759,433 | - | mreB-2 | DVU1681 | 0.54 | +0.1 |
1,759,443 | - | mreB-2 | DVU1681 | 0.55 | +0.0 |
1,759,664 | - | mreB-2 | DVU1681 | 0.77 | -0.1 |
1,759,692 | + | mreB-2 | DVU1681 | 0.80 | -0.2 |
1,759,811 | - | +0.3 | |||
1,759,896 | + | -0.2 | |||
1,759,971 | - | +0.3 | |||
1,760,088 | + | DVU1682 | 0.18 | +1.9 | |
1,760,100 | + | DVU1682 | 0.19 | +1.4 | |
1,760,100 | + | DVU1682 | 0.19 | +0.7 | |
1,760,108 | - | DVU1682 | 0.20 | +0.9 | |
1,760,108 | - | DVU1682 | 0.20 | +1.8 | |
1,760,120 | - | DVU1682 | 0.21 | +1.2 | |
1,760,179 | + | DVU1682 | 0.27 | +0.6 | |
1,760,194 | + | DVU1682 | 0.29 | +0.7 | |
1,760,244 | - | DVU1682 | 0.33 | +0.6 | |
1,760,620 | + | DVU1682 | 0.70 | -0.1 | |
1,760,779 | - | DVU1682 | 0.85 | +0.3 | |
1,760,856 | + | +0.7 | |||
1,760,864 | - | -0.4 | |||
1,761,032 | + | +1.5 | |||
1,761,040 | - | -0.2 | |||
1,761,094 | + | -0.1 | |||
1,761,211 | + | -0.5 | |||
1,761,219 | - | +0.1 | |||
1,761,282 | - | -0.3 | |||
1,761,546 | - | DVU1683 | 0.20 | -0.2 | |
1,761,586 | + | DVU1683 | 0.22 | +0.1 | |
1,761,629 | + | DVU1683 | 0.25 | -0.6 | |
1,761,634 | + | DVU1683 | 0.25 | -0.5 | |
1,761,693 | - | DVU1683 | 0.28 | +1.4 | |
1,761,697 | - | DVU1683 | 0.28 | -0.3 | |
1,761,771 | - | DVU1683 | 0.33 | -0.2 | |
1,761,773 | - | DVU1683 | 0.33 | -0.5 |
Or see this region's nucleotide sequence