Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1631 and DVU1632 are separated by 28 nucleotides DVU1632 and DVU1633 are separated by 1 nucleotides DVU1633 and DVU1634 are separated by 25 nucleotides DVU1634 and DVU1635 overlap by 14 nucleotides DVU1635 and ppaC are separated by 43 nucleotides
DVU1631: DVU1631 - conserved hypothetical protein (TIGR), at 1,714,949 to 1,715,860
DVU1631
DVU1632: DVU1632 - PTS system, IIA component (TIGR), at 1,715,889 to 1,716,326
DVU1632
DVU1633: DVU1633 - PTS system, IIB component (TIGR), at 1,716,328 to 1,716,789
DVU1633
DVU1634: DVU1634 - membrane protein, putative (TIGR), at 1,716,815 to 1,717,486
DVU1634
DVU1635: DVU1635 - hypothetical protein (TIGR), at 1,717,473 to 1,717,577
DVU1635
DVU1636: ppaC - inorganic pyrophosphatase, manganese-dependent (TIGR), at 1,717,621 to 1,718,541
ppaC
Position (kb)
1716
1717
1718 Strain fitness (log2 ratio)
-1
0
1 at 1715.900 kb on + strand at 1715.946 kb on + strand, within DVU1632 at 1715.946 kb on + strand, within DVU1632 at 1715.954 kb on - strand, within DVU1632 at 1715.954 kb on - strand, within DVU1632 at 1715.954 kb on - strand, within DVU1632 at 1716.121 kb on - strand, within DVU1632 at 1716.184 kb on + strand, within DVU1632 at 1716.184 kb on + strand, within DVU1632 at 1716.395 kb on - strand, within DVU1633 at 1716.490 kb on - strand, within DVU1633 at 1716.811 kb on - strand at 1716.992 kb on - strand, within DVU1634 at 1717.171 kb on + strand, within DVU1634 at 1717.189 kb on - strand, within DVU1634 at 1717.338 kb on + strand, within DVU1634
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 1,715,900 + -0.9 1,715,946 + DVU1632 0.13 -1.0 1,715,946 + DVU1632 0.13 -0.5 1,715,954 - DVU1632 0.15 -1.2 1,715,954 - DVU1632 0.15 -0.5 1,715,954 - DVU1632 0.15 -1.5 1,716,121 - DVU1632 0.53 +0.1 1,716,184 + DVU1632 0.67 -1.1 1,716,184 + DVU1632 0.67 +0.3 1,716,395 - DVU1633 0.15 -1.0 1,716,490 - DVU1633 0.35 +0.9 1,716,811 - -0.2 1,716,992 - DVU1634 0.26 -1.0 1,717,171 + DVU1634 0.53 -0.8 1,717,189 - DVU1634 0.56 -0.2 1,717,338 + DVU1634 0.78 -0.9
Or see this region's nucleotide sequence