Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1448 and DVU1449 are separated by 20 nucleotides DVU1449 and DVU1450 overlap by 43 nucleotides DVU1450 and DVU1451 overlap by 1 nucleotides
DVU1448: DVU1448 - conserved hypothetical protein (TIGR), at 1,527,231 to 1,528,367
DVU1448
DVU1449: DVU1449 - anti-anti-sigma factor, putative (TIGR), at 1,528,388 to 1,528,732
DVU1449
DVU1450: DVU1450 - anti-sigma factor, putative (TIGR), at 1,528,690 to 1,529,130
DVU1450
DVU1451: DVU1451 - response regulator (TIGR), at 1,529,130 to 1,530,299
DVU1451
Position (kb)
1528
1529 Strain fitness (log2 ratio)
-2
-1
0
1 at 1527.390 kb on + strand, within DVU1448 at 1527.403 kb on + strand, within DVU1448 at 1527.603 kb on + strand, within DVU1448 at 1527.667 kb on + strand, within DVU1448 at 1527.667 kb on + strand, within DVU1448 at 1527.694 kb on + strand, within DVU1448 at 1527.715 kb on - strand, within DVU1448 at 1527.781 kb on - strand, within DVU1448 at 1527.794 kb on + strand, within DVU1448 at 1527.802 kb on - strand, within DVU1448 at 1527.802 kb on - strand, within DVU1448 at 1527.933 kb on - strand, within DVU1448 at 1527.945 kb on + strand, within DVU1448 at 1527.954 kb on - strand, within DVU1448 at 1528.028 kb on - strand, within DVU1448 at 1528.148 kb on - strand, within DVU1448 at 1528.282 kb on + strand at 1528.290 kb on - strand at 1528.384 kb on - strand at 1528.419 kb on - strand at 1528.488 kb on + strand, within DVU1449 at 1528.493 kb on + strand, within DVU1449 at 1528.496 kb on - strand, within DVU1449 at 1528.501 kb on - strand, within DVU1449 at 1528.759 kb on + strand, within DVU1450 at 1528.759 kb on + strand, within DVU1450 at 1528.764 kb on + strand, within DVU1450 at 1528.772 kb on - strand, within DVU1450 at 1528.772 kb on - strand, within DVU1450 at 1528.798 kb on - strand, within DVU1450 at 1528.819 kb on + strand, within DVU1450 at 1528.904 kb on - strand, within DVU1450 at 1528.921 kb on - strand, within DVU1450 at 1529.011 kb on + strand, within DVU1450 at 1529.018 kb on + strand, within DVU1450 at 1529.018 kb on + strand, within DVU1450 at 1529.026 kb on - strand, within DVU1450 at 1529.026 kb on - strand, within DVU1450 at 1529.069 kb on + strand, within DVU1450 at 1529.079 kb on - strand, within DVU1450 at 1529.095 kb on - strand at 1529.136 kb on - strand at 1529.198 kb on + strand at 1529.254 kb on - strand, within DVU1451 at 1529.332 kb on + strand, within DVU1451 at 1529.345 kb on + strand, within DVU1451 at 1529.364 kb on + strand, within DVU1451 at 1529.484 kb on + strand, within DVU1451 at 1529.484 kb on - strand, within DVU1451 at 1529.494 kb on + strand, within DVU1451 at 1529.515 kb on - strand, within DVU1451 at 1529.526 kb on - strand, within DVU1451 at 1529.526 kb on - strand, within DVU1451 at 1529.575 kb on - strand, within DVU1451 at 1529.588 kb on + strand, within DVU1451 at 1529.600 kb on - strand, within DVU1451 at 1529.642 kb on + strand, within DVU1451 at 1529.675 kb on + strand, within DVU1451 at 1529.705 kb on - strand, within DVU1451
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 1,527,390 + DVU1448 0.14 +0.7 1,527,403 + DVU1448 0.15 -0.8 1,527,603 + DVU1448 0.33 -0.4 1,527,667 + DVU1448 0.38 -1.1 1,527,667 + DVU1448 0.38 -0.7 1,527,694 + DVU1448 0.41 -0.3 1,527,715 - DVU1448 0.43 -1.5 1,527,781 - DVU1448 0.48 +0.2 1,527,794 + DVU1448 0.50 -0.9 1,527,802 - DVU1448 0.50 -0.1 1,527,802 - DVU1448 0.50 -1.2 1,527,933 - DVU1448 0.62 -0.6 1,527,945 + DVU1448 0.63 +0.0 1,527,954 - DVU1448 0.64 -0.5 1,528,028 - DVU1448 0.70 -0.9 1,528,148 - DVU1448 0.81 +0.2 1,528,282 + -0.6 1,528,290 - -1.0 1,528,384 - +0.2 1,528,419 - +0.9 1,528,488 + DVU1449 0.29 +0.1 1,528,493 + DVU1449 0.30 +0.5 1,528,496 - DVU1449 0.31 +0.7 1,528,501 - DVU1449 0.33 +0.7 1,528,759 + DVU1450 0.16 -0.3 1,528,759 + DVU1450 0.16 -0.6 1,528,764 + DVU1450 0.17 -0.7 1,528,772 - DVU1450 0.19 -1.1 1,528,772 - DVU1450 0.19 -0.1 1,528,798 - DVU1450 0.24 +0.3 1,528,819 + DVU1450 0.29 -0.8 1,528,904 - DVU1450 0.49 -1.2 1,528,921 - DVU1450 0.52 +1.2 1,529,011 + DVU1450 0.73 -0.7 1,529,018 + DVU1450 0.74 -0.0 1,529,018 + DVU1450 0.74 -0.4 1,529,026 - DVU1450 0.76 -0.4 1,529,026 - DVU1450 0.76 +0.6 1,529,069 + DVU1450 0.86 -0.0 1,529,079 - DVU1450 0.88 -0.3 1,529,095 - -2.0 1,529,136 - -0.1 1,529,198 + -0.2 1,529,254 - DVU1451 0.11 +0.1 1,529,332 + DVU1451 0.17 -0.1 1,529,345 + DVU1451 0.18 -0.3 1,529,364 + DVU1451 0.20 -0.5 1,529,484 + DVU1451 0.30 -0.0 1,529,484 - DVU1451 0.30 -0.0 1,529,494 + DVU1451 0.31 +0.0 1,529,515 - DVU1451 0.33 -0.5 1,529,526 - DVU1451 0.34 +0.6 1,529,526 - DVU1451 0.34 -0.2 1,529,575 - DVU1451 0.38 -0.1 1,529,588 + DVU1451 0.39 +1.3 1,529,600 - DVU1451 0.40 +1.7 1,529,642 + DVU1451 0.44 -1.5 1,529,675 + DVU1451 0.47 -0.4 1,529,705 - DVU1451 0.49 +0.1
Or see this region's nucleotide sequence