Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1449

Experiment: Formate/Acetate-Sulfate (60/5-30 mM)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1448 and DVU1449 are separated by 20 nucleotidesDVU1449 and DVU1450 overlap by 43 nucleotidesDVU1450 and DVU1451 overlap by 1 nucleotides DVU1448: DVU1448 - conserved hypothetical protein (TIGR), at 1,527,231 to 1,528,367 DVU1448 DVU1449: DVU1449 - anti-anti-sigma factor, putative (TIGR), at 1,528,388 to 1,528,732 DVU1449 DVU1450: DVU1450 - anti-sigma factor, putative (TIGR), at 1,528,690 to 1,529,130 DVU1450 DVU1451: DVU1451 - response regulator (TIGR), at 1,529,130 to 1,530,299 DVU1451 Position (kb) 1528 1529Strain fitness (log2 ratio) -2 -1 0 1at 1527.390 kb on + strand, within DVU1448at 1527.403 kb on + strand, within DVU1448at 1527.603 kb on + strand, within DVU1448at 1527.667 kb on + strand, within DVU1448at 1527.667 kb on + strand, within DVU1448at 1527.694 kb on + strand, within DVU1448at 1527.715 kb on - strand, within DVU1448at 1527.781 kb on - strand, within DVU1448at 1527.794 kb on + strand, within DVU1448at 1527.802 kb on - strand, within DVU1448at 1527.802 kb on - strand, within DVU1448at 1527.933 kb on - strand, within DVU1448at 1527.945 kb on + strand, within DVU1448at 1527.954 kb on - strand, within DVU1448at 1528.028 kb on - strand, within DVU1448at 1528.148 kb on - strand, within DVU1448at 1528.282 kb on + strandat 1528.290 kb on - strandat 1528.384 kb on - strandat 1528.419 kb on - strandat 1528.488 kb on + strand, within DVU1449at 1528.493 kb on + strand, within DVU1449at 1528.496 kb on - strand, within DVU1449at 1528.501 kb on - strand, within DVU1449at 1528.759 kb on + strand, within DVU1450at 1528.759 kb on + strand, within DVU1450at 1528.764 kb on + strand, within DVU1450at 1528.772 kb on - strand, within DVU1450at 1528.772 kb on - strand, within DVU1450at 1528.798 kb on - strand, within DVU1450at 1528.819 kb on + strand, within DVU1450at 1528.904 kb on - strand, within DVU1450at 1528.921 kb on - strand, within DVU1450at 1529.011 kb on + strand, within DVU1450at 1529.018 kb on + strand, within DVU1450at 1529.018 kb on + strand, within DVU1450at 1529.026 kb on - strand, within DVU1450at 1529.026 kb on - strand, within DVU1450at 1529.069 kb on + strand, within DVU1450at 1529.079 kb on - strand, within DVU1450at 1529.095 kb on - strandat 1529.136 kb on - strandat 1529.198 kb on + strandat 1529.254 kb on - strand, within DVU1451at 1529.332 kb on + strand, within DVU1451at 1529.345 kb on + strand, within DVU1451at 1529.364 kb on + strand, within DVU1451at 1529.484 kb on + strand, within DVU1451at 1529.484 kb on - strand, within DVU1451at 1529.494 kb on + strand, within DVU1451at 1529.515 kb on - strand, within DVU1451at 1529.526 kb on - strand, within DVU1451at 1529.526 kb on - strand, within DVU1451at 1529.575 kb on - strand, within DVU1451at 1529.588 kb on + strand, within DVU1451at 1529.600 kb on - strand, within DVU1451at 1529.642 kb on + strand, within DVU1451at 1529.675 kb on + strand, within DVU1451at 1529.705 kb on - strand, within DVU1451

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM)
remove
1,527,390 + DVU1448 0.14 +0.7
1,527,403 + DVU1448 0.15 -0.8
1,527,603 + DVU1448 0.33 -0.4
1,527,667 + DVU1448 0.38 -1.1
1,527,667 + DVU1448 0.38 -0.7
1,527,694 + DVU1448 0.41 -0.3
1,527,715 - DVU1448 0.43 -1.5
1,527,781 - DVU1448 0.48 +0.2
1,527,794 + DVU1448 0.50 -0.9
1,527,802 - DVU1448 0.50 -0.1
1,527,802 - DVU1448 0.50 -1.2
1,527,933 - DVU1448 0.62 -0.6
1,527,945 + DVU1448 0.63 +0.0
1,527,954 - DVU1448 0.64 -0.5
1,528,028 - DVU1448 0.70 -0.9
1,528,148 - DVU1448 0.81 +0.2
1,528,282 + -0.6
1,528,290 - -1.0
1,528,384 - +0.2
1,528,419 - +0.9
1,528,488 + DVU1449 0.29 +0.1
1,528,493 + DVU1449 0.30 +0.5
1,528,496 - DVU1449 0.31 +0.7
1,528,501 - DVU1449 0.33 +0.7
1,528,759 + DVU1450 0.16 -0.3
1,528,759 + DVU1450 0.16 -0.6
1,528,764 + DVU1450 0.17 -0.7
1,528,772 - DVU1450 0.19 -1.1
1,528,772 - DVU1450 0.19 -0.1
1,528,798 - DVU1450 0.24 +0.3
1,528,819 + DVU1450 0.29 -0.8
1,528,904 - DVU1450 0.49 -1.2
1,528,921 - DVU1450 0.52 +1.2
1,529,011 + DVU1450 0.73 -0.7
1,529,018 + DVU1450 0.74 -0.0
1,529,018 + DVU1450 0.74 -0.4
1,529,026 - DVU1450 0.76 -0.4
1,529,026 - DVU1450 0.76 +0.6
1,529,069 + DVU1450 0.86 -0.0
1,529,079 - DVU1450 0.88 -0.3
1,529,095 - -2.0
1,529,136 - -0.1
1,529,198 + -0.2
1,529,254 - DVU1451 0.11 +0.1
1,529,332 + DVU1451 0.17 -0.1
1,529,345 + DVU1451 0.18 -0.3
1,529,364 + DVU1451 0.20 -0.5
1,529,484 + DVU1451 0.30 -0.0
1,529,484 - DVU1451 0.30 -0.0
1,529,494 + DVU1451 0.31 +0.0
1,529,515 - DVU1451 0.33 -0.5
1,529,526 - DVU1451 0.34 +0.6
1,529,526 - DVU1451 0.34 -0.2
1,529,575 - DVU1451 0.38 -0.1
1,529,588 + DVU1451 0.39 +1.3
1,529,600 - DVU1451 0.40 +1.7
1,529,642 + DVU1451 0.44 -1.5
1,529,675 + DVU1451 0.47 -0.4
1,529,705 - DVU1451 0.49 +0.1

Or see this region's nucleotide sequence