Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1376

Experiment: Formate/Acetate-Sulfate (60/5-30 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdivIVA and DVU1374 overlap by 8 nucleotidesDVU1374 and DVU1375 are separated by 20 nucleotidesDVU1375 and ilvB-2 are separated by 0 nucleotidesilvB-2 and ilvN-2 are separated by 9 nucleotidesilvN-2 and ilvC are separated by 121 nucleotides DVU1373: divIVA - cell-division initiation protein DivIVA (TIGR), at 1,450,470 to 1,450,979 divIVA DVU1374: DVU1374 - conserved hypothetical protein (TIGR), at 1,450,972 to 1,451,292 DVU1374 DVU1375: DVU1375 - hypothetical protein (TIGR), at 1,451,313 to 1,451,543 DVU1375 DVU1376: ilvB-2 - acetolactate synthase, large subunit, biosynthetic type (TIGR), at 1,451,544 to 1,453,235 ilvB-2 DVU1377: ilvN-2 - acetolactate synthase, small subunit (TIGR), at 1,453,245 to 1,453,733 ilvN-2 DVU1378: ilvC - ketol-acid reductoisomerase (TIGR), at 1,453,855 to 1,454,850 ilvC Position (kb) 1451 1452 1453 1454Strain fitness (log2 ratio) -3 -2 -1 0 1at 1450.687 kb on - strand, within divIVAat 1450.689 kb on + strand, within divIVAat 1450.992 kb on + strandat 1451.000 kb on - strandat 1451.060 kb on + strand, within DVU1374at 1451.084 kb on + strand, within DVU1374at 1451.097 kb on + strand, within DVU1374at 1451.126 kb on - strand, within DVU1374at 1451.172 kb on + strand, within DVU1374at 1451.262 kb on + strandat 1451.352 kb on + strand, within DVU1375at 1451.352 kb on + strand, within DVU1375at 1451.360 kb on - strand, within DVU1375at 1451.362 kb on - strand, within DVU1375at 1451.522 kb on + strandat 1451.530 kb on - strandat 1451.530 kb on - strandat 1451.537 kb on + strandat 1451.567 kb on - strandat 1451.723 kb on + strand, within ilvB-2at 1451.730 kb on + strand, within ilvB-2at 1451.738 kb on - strand, within ilvB-2at 1451.740 kb on + strand, within ilvB-2at 1451.813 kb on - strand, within ilvB-2at 1451.831 kb on + strand, within ilvB-2at 1451.924 kb on + strand, within ilvB-2at 1451.924 kb on + strand, within ilvB-2at 1451.932 kb on - strand, within ilvB-2at 1451.932 kb on - strand, within ilvB-2at 1452.056 kb on + strand, within ilvB-2at 1452.143 kb on + strand, within ilvB-2at 1452.240 kb on + strand, within ilvB-2at 1452.568 kb on - strand, within ilvB-2at 1452.568 kb on - strand, within ilvB-2at 1452.568 kb on - strand, within ilvB-2at 1452.568 kb on - strand, within ilvB-2at 1452.717 kb on - strand, within ilvB-2at 1452.746 kb on + strand, within ilvB-2at 1452.746 kb on + strand, within ilvB-2at 1452.746 kb on + strand, within ilvB-2at 1452.746 kb on + strand, within ilvB-2at 1452.746 kb on + strand, within ilvB-2at 1453.110 kb on - strandat 1453.158 kb on - strandat 1453.247 kb on - strandat 1453.249 kb on + strandat 1453.376 kb on + strand, within ilvN-2at 1453.486 kb on + strand, within ilvN-2at 1453.696 kb on + strandat 1453.701 kb on + strandat 1454.150 kb on - strand, within ilvCat 1454.208 kb on + strand, within ilvC

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM)
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1,450,687 - divIVA DVU1373 0.43 -1.6
1,450,689 + divIVA DVU1373 0.43 -0.8
1,450,992 + -0.1
1,451,000 - -0.3
1,451,060 + DVU1374 0.27 -0.2
1,451,084 + DVU1374 0.35 +0.1
1,451,097 + DVU1374 0.39 +0.5
1,451,126 - DVU1374 0.48 -0.1
1,451,172 + DVU1374 0.62 -0.3
1,451,262 + -0.2
1,451,352 + DVU1375 0.17 +1.1
1,451,352 + DVU1375 0.17 +0.0
1,451,360 - DVU1375 0.20 -0.4
1,451,362 - DVU1375 0.21 -1.0
1,451,522 + -0.9
1,451,530 - -0.8
1,451,530 - -1.0
1,451,537 + -1.3
1,451,567 - -1.9
1,451,723 + ilvB-2 DVU1376 0.11 +0.5
1,451,730 + ilvB-2 DVU1376 0.11 -2.9
1,451,738 - ilvB-2 DVU1376 0.11 -3.5
1,451,740 + ilvB-2 DVU1376 0.12 -2.8
1,451,813 - ilvB-2 DVU1376 0.16 -1.3
1,451,831 + ilvB-2 DVU1376 0.17 -3.3
1,451,924 + ilvB-2 DVU1376 0.22 -3.6
1,451,924 + ilvB-2 DVU1376 0.22 -3.6
1,451,932 - ilvB-2 DVU1376 0.23 -3.4
1,451,932 - ilvB-2 DVU1376 0.23 -3.2
1,452,056 + ilvB-2 DVU1376 0.30 -3.5
1,452,143 + ilvB-2 DVU1376 0.35 -1.9
1,452,240 + ilvB-2 DVU1376 0.41 -1.5
1,452,568 - ilvB-2 DVU1376 0.61 -0.5
1,452,568 - ilvB-2 DVU1376 0.61 -2.1
1,452,568 - ilvB-2 DVU1376 0.61 -3.7
1,452,568 - ilvB-2 DVU1376 0.61 -3.0
1,452,717 - ilvB-2 DVU1376 0.69 -2.4
1,452,746 + ilvB-2 DVU1376 0.71 -2.2
1,452,746 + ilvB-2 DVU1376 0.71 -1.3
1,452,746 + ilvB-2 DVU1376 0.71 -1.0
1,452,746 + ilvB-2 DVU1376 0.71 -1.7
1,452,746 + ilvB-2 DVU1376 0.71 -1.4
1,453,110 - -2.7
1,453,158 - -1.6
1,453,247 - -1.7
1,453,249 + -2.2
1,453,376 + ilvN-2 DVU1377 0.27 +0.1
1,453,486 + ilvN-2 DVU1377 0.49 -1.5
1,453,696 + -0.7
1,453,701 + -1.7
1,454,150 - ilvC DVU1378 0.30 -2.9
1,454,208 + ilvC DVU1378 0.35 -3.0

Or see this region's nucleotide sequence