Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1373

Experiment: Formate/Acetate-Sulfate (60/5-30 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1371 and DVU1372 are separated by 104 nucleotidesDVU1372 and divIVA are separated by 8 nucleotidesdivIVA and DVU1374 overlap by 8 nucleotidesDVU1374 and DVU1375 are separated by 20 nucleotidesDVU1375 and ilvB-2 are separated by 0 nucleotides DVU1371: DVU1371 - HAD-superfamily hydrolase, subfamily IA (TIGR), at 1,449,380 to 1,450,054 DVU1371 DVU1372: DVU1372 - membrane protein, putative (TIGR), at 1,450,159 to 1,450,461 DVU1372 DVU1373: divIVA - cell-division initiation protein DivIVA (TIGR), at 1,450,470 to 1,450,979 divIVA DVU1374: DVU1374 - conserved hypothetical protein (TIGR), at 1,450,972 to 1,451,292 DVU1374 DVU1375: DVU1375 - hypothetical protein (TIGR), at 1,451,313 to 1,451,543 DVU1375 DVU1376: ilvB-2 - acetolactate synthase, large subunit, biosynthetic type (TIGR), at 1,451,544 to 1,453,235 ilvB-2 Position (kb) 1450 1451Strain fitness (log2 ratio) -3 -2 -1 0 1at 1449.606 kb on - strand, within DVU1371at 1449.677 kb on - strand, within DVU1371at 1449.751 kb on - strand, within DVU1371at 1449.752 kb on - strand, within DVU1371at 1449.763 kb on - strand, within DVU1371at 1449.772 kb on - strand, within DVU1371at 1449.773 kb on - strand, within DVU1371at 1449.854 kb on - strand, within DVU1371at 1449.949 kb on + strand, within DVU1371at 1449.966 kb on + strand, within DVU1371at 1450.008 kb on - strandat 1450.161 kb on - strandat 1450.249 kb on + strand, within DVU1372at 1450.254 kb on + strand, within DVU1372at 1450.254 kb on + strand, within DVU1372at 1450.268 kb on - strand, within DVU1372at 1450.275 kb on + strand, within DVU1372at 1450.283 kb on - strand, within DVU1372at 1450.297 kb on - strand, within DVU1372at 1450.353 kb on - strand, within DVU1372at 1450.364 kb on + strand, within DVU1372at 1450.442 kb on - strandat 1450.492 kb on + strandat 1450.687 kb on - strand, within divIVAat 1450.689 kb on + strand, within divIVAat 1450.992 kb on + strandat 1451.000 kb on - strandat 1451.060 kb on + strand, within DVU1374at 1451.084 kb on + strand, within DVU1374at 1451.097 kb on + strand, within DVU1374at 1451.126 kb on - strand, within DVU1374at 1451.172 kb on + strand, within DVU1374at 1451.262 kb on + strandat 1451.352 kb on + strand, within DVU1375at 1451.352 kb on + strand, within DVU1375at 1451.360 kb on - strand, within DVU1375at 1451.362 kb on - strand, within DVU1375at 1451.522 kb on + strandat 1451.530 kb on - strandat 1451.530 kb on - strandat 1451.537 kb on + strandat 1451.567 kb on - strandat 1451.723 kb on + strand, within ilvB-2at 1451.730 kb on + strand, within ilvB-2at 1451.738 kb on - strand, within ilvB-2at 1451.740 kb on + strand, within ilvB-2at 1451.813 kb on - strand, within ilvB-2at 1451.831 kb on + strand, within ilvB-2at 1451.924 kb on + strand, within ilvB-2at 1451.924 kb on + strand, within ilvB-2at 1451.932 kb on - strand, within ilvB-2at 1451.932 kb on - strand, within ilvB-2

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM)
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1,449,606 - DVU1371 0.33 +0.0
1,449,677 - DVU1371 0.44 -0.5
1,449,751 - DVU1371 0.55 -0.2
1,449,752 - DVU1371 0.55 +0.1
1,449,763 - DVU1371 0.57 +1.2
1,449,772 - DVU1371 0.58 +0.7
1,449,773 - DVU1371 0.58 -0.4
1,449,854 - DVU1371 0.70 -1.2
1,449,949 + DVU1371 0.84 -0.1
1,449,966 + DVU1371 0.87 +0.1
1,450,008 - +0.2
1,450,161 - -0.5
1,450,249 + DVU1372 0.30 -0.3
1,450,254 + DVU1372 0.31 +0.0
1,450,254 + DVU1372 0.31 -0.4
1,450,268 - DVU1372 0.36 +0.4
1,450,275 + DVU1372 0.38 -0.3
1,450,283 - DVU1372 0.41 -0.4
1,450,297 - DVU1372 0.46 +0.5
1,450,353 - DVU1372 0.64 -1.0
1,450,364 + DVU1372 0.68 -0.5
1,450,442 - -0.2
1,450,492 + -0.0
1,450,687 - divIVA DVU1373 0.43 -1.6
1,450,689 + divIVA DVU1373 0.43 -0.8
1,450,992 + -0.1
1,451,000 - -0.3
1,451,060 + DVU1374 0.27 -0.2
1,451,084 + DVU1374 0.35 +0.1
1,451,097 + DVU1374 0.39 +0.5
1,451,126 - DVU1374 0.48 -0.1
1,451,172 + DVU1374 0.62 -0.3
1,451,262 + -0.2
1,451,352 + DVU1375 0.17 +1.1
1,451,352 + DVU1375 0.17 +0.0
1,451,360 - DVU1375 0.20 -0.4
1,451,362 - DVU1375 0.21 -1.0
1,451,522 + -0.9
1,451,530 - -0.8
1,451,530 - -1.0
1,451,537 + -1.3
1,451,567 - -1.9
1,451,723 + ilvB-2 DVU1376 0.11 +0.5
1,451,730 + ilvB-2 DVU1376 0.11 -2.9
1,451,738 - ilvB-2 DVU1376 0.11 -3.5
1,451,740 + ilvB-2 DVU1376 0.12 -2.8
1,451,813 - ilvB-2 DVU1376 0.16 -1.3
1,451,831 + ilvB-2 DVU1376 0.17 -3.3
1,451,924 + ilvB-2 DVU1376 0.22 -3.6
1,451,924 + ilvB-2 DVU1376 0.22 -3.6
1,451,932 - ilvB-2 DVU1376 0.23 -3.4
1,451,932 - ilvB-2 DVU1376 0.23 -3.2

Or see this region's nucleotide sequence