Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1127 and DVU1128 overlap by 8 nucleotides DVU1128 and DVU1129 overlap by 1 nucleotides DVU1129 and DVU1130 are separated by 73 nucleotides DVU1130 and DVU1131 overlap by 17 nucleotides DVU1131 and DVU1132 overlap by 4 nucleotides
DVU1127: DVU1127 - hypothetical protein (TIGR), at 1,229,708 to 1,230,121
DVU1127
DVU1128: DVU1128 - lysozyme, putative (TIGR), at 1,230,114 to 1,230,779
DVU1128
DVU1129: DVU1129 - conserved hypothetical protein (TIGR), at 1,230,779 to 1,231,147
DVU1129
DVU1130: DVU1130 - DNA-binding protein (TIGR), at 1,231,221 to 1,231,685
DVU1130
DVU1131: DVU1131 - hypothetical protein (TIGR), at 1,231,669 to 1,232,034
DVU1131
DVU1132: DVU1132 - conserved hypothetical protein (TIGR), at 1,232,031 to 1,232,540
DVU1132
Position (kb) 1230
1231
1232 Strain fitness (log2 ratio) -1
0
1 at 1229.843 kb on + strand, within DVU1127 at 1229.853 kb on - strand, within DVU1127 at 1229.856 kb on - strand, within DVU1127 at 1229.886 kb on - strand, within DVU1127 at 1229.984 kb on - strand, within DVU1127 at 1230.003 kb on - strand, within DVU1127 at 1230.003 kb on - strand, within DVU1127 at 1230.055 kb on + strand, within DVU1127 at 1230.081 kb on - strand at 1230.100 kb on + strand at 1230.108 kb on - strand at 1230.156 kb on + strand at 1230.158 kb on - strand at 1230.227 kb on + strand, within DVU1128 at 1230.377 kb on + strand, within DVU1128 at 1230.459 kb on + strand, within DVU1128 at 1230.460 kb on + strand, within DVU1128 at 1230.508 kb on + strand, within DVU1128 at 1230.508 kb on + strand, within DVU1128 at 1230.516 kb on - strand, within DVU1128 at 1230.545 kb on - strand, within DVU1128 at 1230.626 kb on - strand, within DVU1128 at 1230.652 kb on - strand, within DVU1128 at 1230.779 kb on + strand at 1230.889 kb on - strand, within DVU1129 at 1230.889 kb on - strand, within DVU1129 at 1230.936 kb on + strand, within DVU1129 at 1230.996 kb on + strand, within DVU1129 at 1231.006 kb on - strand, within DVU1129 at 1231.049 kb on - strand, within DVU1129 at 1231.080 kb on - strand, within DVU1129 at 1231.213 kb on + strand at 1231.310 kb on - strand, within DVU1130 at 1231.317 kb on + strand, within DVU1130 at 1231.382 kb on + strand, within DVU1130 at 1231.403 kb on - strand, within DVU1130 at 1231.476 kb on + strand, within DVU1130 at 1231.539 kb on - strand, within DVU1130 at 1231.588 kb on + strand, within DVU1130 at 1231.598 kb on - strand, within DVU1130 at 1231.727 kb on + strand, within DVU1131 at 1231.727 kb on + strand, within DVU1131 at 1231.758 kb on + strand, within DVU1131 at 1231.776 kb on - strand, within DVU1131 at 1231.777 kb on + strand, within DVU1131 at 1231.783 kb on - strand, within DVU1131 at 1231.784 kb on + strand, within DVU1131 at 1231.836 kb on - strand, within DVU1131 at 1231.869 kb on - strand, within DVU1131
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 1,229,843 + DVU1127 0.33 -0.3 1,229,853 - DVU1127 0.35 -0.1 1,229,856 - DVU1127 0.36 -0.3 1,229,886 - DVU1127 0.43 +0.0 1,229,984 - DVU1127 0.67 +0.0 1,230,003 - DVU1127 0.71 -0.9 1,230,003 - DVU1127 0.71 -0.2 1,230,055 + DVU1127 0.84 +0.1 1,230,081 - -0.4 1,230,100 + -0.3 1,230,108 - +0.3 1,230,156 + -1.4 1,230,158 - -0.0 1,230,227 + DVU1128 0.17 -0.1 1,230,377 + DVU1128 0.39 -0.2 1,230,459 + DVU1128 0.52 -0.6 1,230,460 + DVU1128 0.52 -0.1 1,230,508 + DVU1128 0.59 -0.7 1,230,508 + DVU1128 0.59 -1.0 1,230,516 - DVU1128 0.60 +1.5 1,230,545 - DVU1128 0.65 -0.1 1,230,626 - DVU1128 0.77 -0.4 1,230,652 - DVU1128 0.81 -0.1 1,230,779 + -0.6 1,230,889 - DVU1129 0.30 +0.0 1,230,889 - DVU1129 0.30 -0.0 1,230,936 + DVU1129 0.43 +0.3 1,230,996 + DVU1129 0.59 -1.1 1,231,006 - DVU1129 0.62 +1.3 1,231,049 - DVU1129 0.73 -0.0 1,231,080 - DVU1129 0.82 +0.0 1,231,213 + +1.1 1,231,310 - DVU1130 0.19 +0.0 1,231,317 + DVU1130 0.21 -0.9 1,231,382 + DVU1130 0.35 -0.0 1,231,403 - DVU1130 0.39 -0.1 1,231,476 + DVU1130 0.55 -0.1 1,231,539 - DVU1130 0.68 -0.2 1,231,588 + DVU1130 0.79 -1.2 1,231,598 - DVU1130 0.81 +0.1 1,231,727 + DVU1131 0.16 -0.6 1,231,727 + DVU1131 0.16 -0.5 1,231,758 + DVU1131 0.24 -0.6 1,231,776 - DVU1131 0.29 +0.0 1,231,777 + DVU1131 0.30 -0.0 1,231,783 - DVU1131 0.31 -0.2 1,231,784 + DVU1131 0.31 -0.3 1,231,836 - DVU1131 0.46 -0.8 1,231,869 - DVU1131 0.55 +0.9
Or see this region's nucleotide sequence