Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1037 and hisA are separated by 102 nucleotides hisA and DVU1039 overlap by 4 nucleotides DVU1039 and hisB overlap by 1 nucleotides
DVU1037: DVU1037 - mercuric reductase, putative (TIGR), at 1,139,907 to 1,141,349
DVU1037
DVU1038: hisA - phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (TIGR), at 1,141,452 to 1,142,201
hisA
DVU1039: DVU1039 - lipoprotein, putative (TIGR), at 1,142,198 to 1,142,839
DVU1039
DVU1040: hisB - imidazoleglycerol-phosphate dehydratase (TIGR), at 1,142,839 to 1,143,447
hisB
Position (kb)
1141
1142
1143 Strain fitness (log2 ratio)
-2
-1
0
1 at 1140.576 kb on - strand, within DVU1037 at 1140.641 kb on + strand, within DVU1037 at 1140.717 kb on - strand, within DVU1037 at 1140.729 kb on + strand, within DVU1037 at 1140.730 kb on + strand, within DVU1037 at 1140.814 kb on + strand, within DVU1037 at 1140.949 kb on - strand, within DVU1037 at 1140.952 kb on - strand, within DVU1037 at 1140.968 kb on - strand, within DVU1037 at 1141.150 kb on - strand, within DVU1037 at 1141.163 kb on - strand, within DVU1037 at 1141.189 kb on + strand, within DVU1037 at 1141.197 kb on - strand, within DVU1037 at 1141.197 kb on - strand, within DVU1037 at 1141.217 kb on + strand at 1141.217 kb on + strand at 1141.218 kb on + strand at 1141.228 kb on + strand at 1141.236 kb on - strand at 1141.447 kb on - strand at 1141.478 kb on + strand at 1141.486 kb on - strand at 1141.503 kb on - strand at 1141.561 kb on + strand, within hisA at 1141.631 kb on - strand, within hisA at 1141.633 kb on + strand, within hisA at 1141.633 kb on + strand, within hisA at 1141.633 kb on + strand, within hisA at 1141.641 kb on - strand, within hisA at 1141.743 kb on + strand, within hisA at 1142.159 kb on + strand at 1142.220 kb on - strand at 1142.302 kb on - strand, within DVU1039 at 1142.586 kb on + strand, within DVU1039 at 1142.618 kb on + strand, within DVU1039 at 1142.621 kb on - strand, within DVU1039 at 1142.660 kb on - strand, within DVU1039
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 1,140,576 - DVU1037 0.46 -0.2 1,140,641 + DVU1037 0.51 +0.1 1,140,717 - DVU1037 0.56 -1.1 1,140,729 + DVU1037 0.57 +0.0 1,140,730 + DVU1037 0.57 -0.5 1,140,814 + DVU1037 0.63 +0.1 1,140,949 - DVU1037 0.72 -0.5 1,140,952 - DVU1037 0.72 +0.2 1,140,968 - DVU1037 0.74 +0.1 1,141,150 - DVU1037 0.86 +0.0 1,141,163 - DVU1037 0.87 -0.5 1,141,189 + DVU1037 0.89 -0.1 1,141,197 - DVU1037 0.89 +0.0 1,141,197 - DVU1037 0.89 +0.1 1,141,217 + +1.0 1,141,217 + -0.0 1,141,218 + -0.2 1,141,228 + +0.1 1,141,236 - -0.5 1,141,447 - -1.4 1,141,478 + -0.9 1,141,486 - +1.0 1,141,503 - -0.2 1,141,561 + hisA DVU1038 0.15 -0.0 1,141,631 - hisA DVU1038 0.24 -0.4 1,141,633 + hisA DVU1038 0.24 -2.0 1,141,633 + hisA DVU1038 0.24 -0.0 1,141,633 + hisA DVU1038 0.24 +0.3 1,141,641 - hisA DVU1038 0.25 -1.4 1,141,743 + hisA DVU1038 0.39 -1.2 1,142,159 + +0.1 1,142,220 - +0.5 1,142,302 - DVU1039 0.16 -0.9 1,142,586 + DVU1039 0.60 -0.0 1,142,618 + DVU1039 0.65 -2.7 1,142,621 - DVU1039 0.66 -0.8 1,142,660 - DVU1039 0.72 -0.6
Or see this region's nucleotide sequence