Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0897 and DVU0898 are separated by 84 nucleotides DVU0898 and DVU0899 overlap by 4 nucleotides DVU0899 and gmk overlap by 1 nucleotides gmk and pyrF overlap by 1 nucleotides
DVU0897: DVU0897 - RNA modification enzyme, MiaB-family (TIGR), at 989,827 to 991,203
DVU0897
DVU0898: DVU0898 - conserved hypothetical protein (TIGR), at 991,288 to 992,169
DVU0898
DVU0899: DVU0899 - conserved hypothetical protein (TIGR), at 992,166 to 992,426
DVU0899
DVU0900: gmk - guanylate kinase (TIGR), at 992,426 to 993,049
gmk
DVU0901: pyrF - orotidine 5`-phosphate decarboxylase (TIGR), at 993,049 to 993,756
pyrF
Position (kb) 992
993 Strain fitness (log2 ratio) -2
-1
0
1 at 991.218 kb on + strand at 991.279 kb on - strand at 991.291 kb on - strand at 991.349 kb on + strand at 991.355 kb on - strand at 991.372 kb on - strand at 991.395 kb on - strand, within DVU0898 at 991.418 kb on + strand, within DVU0898 at 991.483 kb on - strand, within DVU0898 at 991.504 kb on - strand, within DVU0898 at 991.507 kb on + strand, within DVU0898 at 991.507 kb on + strand, within DVU0898 at 991.546 kb on + strand, within DVU0898 at 991.685 kb on + strand, within DVU0898 at 991.730 kb on + strand, within DVU0898 at 991.738 kb on - strand, within DVU0898 at 991.738 kb on - strand, within DVU0898 at 991.793 kb on - strand, within DVU0898 at 991.821 kb on + strand, within DVU0898 at 991.876 kb on + strand, within DVU0898 at 991.914 kb on + strand, within DVU0898 at 991.937 kb on + strand, within DVU0898 at 991.998 kb on + strand, within DVU0898 at 992.090 kb on - strand at 992.139 kb on - strand at 992.341 kb on - strand, within DVU0899 at 992.367 kb on - strand, within DVU0899
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 991,218 + +0.0 991,279 - -1.9 991,291 - +0.2 991,349 + -0.2 991,355 - +0.4 991,372 - +0.2 991,395 - DVU0898 0.12 -1.7 991,418 + DVU0898 0.15 +1.5 991,483 - DVU0898 0.22 -0.0 991,504 - DVU0898 0.24 -0.4 991,507 + DVU0898 0.25 -0.2 991,507 + DVU0898 0.25 -0.3 991,546 + DVU0898 0.29 +1.0 991,685 + DVU0898 0.45 -0.5 991,730 + DVU0898 0.50 -0.4 991,738 - DVU0898 0.51 +0.1 991,738 - DVU0898 0.51 -1.0 991,793 - DVU0898 0.57 -0.6 991,821 + DVU0898 0.60 -0.1 991,876 + DVU0898 0.67 +0.0 991,914 + DVU0898 0.71 -0.1 991,937 + DVU0898 0.74 +0.1 991,998 + DVU0898 0.80 +1.5 992,090 - +0.2 992,139 - +0.5 992,341 - DVU0899 0.67 -1.4 992,367 - DVU0899 0.77 -1.6
Or see this region's nucleotide sequence