Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nirJ-1 and DVU0858 are separated by 315 nucleotides DVU0858 and DORF7824 are separated by 84 nucleotides DORF7824 and DVU0859 are separated by 14 nucleotides
DVU0857: nirJ-1 - radical SAM domain protein (TIGR), at 946,761 to 947,942
nirJ-1
DVU0858: DVU0858 - lipoprotein, putative (TIGR), at 948,258 to 948,941
DVU0858
DORF7824: DORF7824 - SEED: FIG00603141: hypothetical protein, at 949,026 to 949,361
DORF7824
DVU0859: DVU0859 - hypothetical protein (TIGR), at 949,376 to 950,656
DVU0859
Position (kb) 948
949 Strain fitness (log2 ratio) -1
0
1 at 948.113 kb on - strand at 948.189 kb on + strand at 948.201 kb on + strand at 948.223 kb on + strand at 948.312 kb on + strand at 948.322 kb on + strand at 948.345 kb on + strand, within DVU0858 at 948.394 kb on - strand, within DVU0858 at 948.403 kb on + strand, within DVU0858 at 948.571 kb on + strand, within DVU0858 at 948.579 kb on - strand, within DVU0858 at 948.603 kb on - strand, within DVU0858 at 948.664 kb on - strand, within DVU0858 at 948.664 kb on - strand, within DVU0858 at 948.794 kb on - strand, within DVU0858 at 948.795 kb on - strand, within DVU0858 at 948.854 kb on - strand, within DVU0858 at 948.894 kb on + strand at 948.894 kb on + strand at 948.902 kb on - strand at 948.925 kb on + strand at 948.960 kb on - strand at 948.974 kb on + strand at 949.042 kb on - strand at 949.107 kb on - strand, within DORF7824 at 949.109 kb on + strand, within DORF7824 at 949.112 kb on - strand, within DORF7824 at 949.247 kb on - strand, within DORF7824 at 949.264 kb on + strand, within DORF7824 at 949.264 kb on + strand, within DORF7824 at 949.310 kb on + strand, within DORF7824 at 949.351 kb on + strand at 949.419 kb on - strand at 949.507 kb on - strand, within DVU0859 at 949.562 kb on + strand, within DVU0859 at 949.568 kb on - strand, within DVU0859 at 949.783 kb on + strand, within DVU0859 at 949.800 kb on - strand, within DVU0859 at 949.806 kb on + strand, within DVU0859 at 949.857 kb on - strand, within DVU0859 at 949.937 kb on + strand, within DVU0859
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 948,113 - -0.5 948,189 + -0.0 948,201 + +0.2 948,223 + -0.6 948,312 + +0.6 948,322 + +0.6 948,345 + DVU0858 0.13 +1.1 948,394 - DVU0858 0.20 +0.7 948,403 + DVU0858 0.21 +0.6 948,571 + DVU0858 0.46 +0.6 948,579 - DVU0858 0.47 +0.8 948,603 - DVU0858 0.50 +0.8 948,664 - DVU0858 0.59 +0.7 948,664 - DVU0858 0.59 +0.2 948,794 - DVU0858 0.78 +0.7 948,795 - DVU0858 0.79 +0.6 948,854 - DVU0858 0.87 -0.5 948,894 + +1.3 948,894 + +1.3 948,902 - +0.6 948,925 + +0.6 948,960 - -0.9 948,974 + +0.6 949,042 - -0.6 949,107 - DORF7824 0.24 -0.5 949,109 + DORF7824 0.25 -0.2 949,112 - DORF7824 0.26 -0.1 949,247 - DORF7824 0.66 -0.3 949,264 + DORF7824 0.71 -0.2 949,264 + DORF7824 0.71 -0.2 949,310 + DORF7824 0.85 -0.3 949,351 + -0.6 949,419 - -0.3 949,507 - DVU0859 0.10 +0.1 949,562 + DVU0859 0.15 +1.0 949,568 - DVU0859 0.15 +0.5 949,783 + DVU0859 0.32 +0.3 949,800 - DVU0859 0.33 -0.0 949,806 + DVU0859 0.34 +1.3 949,857 - DVU0859 0.38 +0.1 949,937 + DVU0859 0.44 -0.6
Or see this region's nucleotide sequence