Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gdp and hup-2 are separated by 119 nucleotides hup-2 and DORF7327 are separated by 292 nucleotides DORF7327 and DVU0765 overlap by 8 nucleotides
DVU0763: gdp - GGDEF domain protein (TIGR), at 853,682 to 854,617
gdp
DVU0764: hup-2 - DNA-binding protein HU (TIGR), at 854,737 to 855,012
hup-2
DORF7327: DORF7327 - no description, at 855,305 to 855,571
DORF7327
DVU0765: DVU0765 - hydroxypyruvate reductase, putative (TIGR), at 855,564 to 856,928
DVU0765
Position (kb) 854
855
856 Strain fitness (log2 ratio) -2
-1
0
1 at 853.784 kb on + strand, within gdp at 853.890 kb on + strand, within gdp at 854.058 kb on - strand, within gdp at 854.060 kb on - strand, within gdp at 854.102 kb on + strand, within gdp at 854.112 kb on - strand, within gdp at 854.128 kb on + strand, within gdp at 854.156 kb on + strand, within gdp at 854.171 kb on + strand, within gdp at 854.179 kb on - strand, within gdp at 854.222 kb on - strand, within gdp at 854.230 kb on + strand, within gdp at 854.239 kb on + strand, within gdp at 854.276 kb on + strand, within gdp at 854.360 kb on + strand, within gdp at 854.360 kb on - strand, within gdp at 854.534 kb on + strand at 854.624 kb on - strand at 854.682 kb on - strand at 854.752 kb on - strand at 854.788 kb on + strand, within hup-2 at 854.801 kb on - strand, within hup-2 at 854.885 kb on + strand, within hup-2 at 854.885 kb on + strand, within hup-2 at 855.166 kb on + strand at 855.166 kb on + strand at 855.172 kb on - strand at 855.174 kb on - strand at 855.174 kb on - strand at 855.184 kb on - strand at 855.184 kb on - strand at 855.208 kb on - strand at 855.258 kb on - strand at 855.282 kb on + strand at 855.289 kb on + strand at 855.290 kb on - strand at 855.311 kb on - strand at 855.367 kb on + strand, within DORF7327 at 855.385 kb on + strand, within DORF7327 at 855.398 kb on + strand, within DORF7327 at 855.414 kb on - strand, within DORF7327 at 855.453 kb on - strand, within DORF7327 at 855.570 kb on - strand at 855.603 kb on - strand at 855.634 kb on + strand at 855.677 kb on - strand at 855.694 kb on + strand at 855.779 kb on - strand, within DVU0765 at 855.891 kb on - strand, within DVU0765 at 855.908 kb on + strand, within DVU0765 at 855.908 kb on + strand, within DVU0765 at 855.908 kb on + strand, within DVU0765 at 855.908 kb on + strand, within DVU0765
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 853,784 + gdp DVU0763 0.11 -0.4 853,890 + gdp DVU0763 0.22 -0.2 854,058 - gdp DVU0763 0.40 -0.9 854,060 - gdp DVU0763 0.40 -0.8 854,102 + gdp DVU0763 0.45 -0.5 854,112 - gdp DVU0763 0.46 -0.7 854,128 + gdp DVU0763 0.48 -0.2 854,156 + gdp DVU0763 0.51 +1.4 854,171 + gdp DVU0763 0.52 -0.1 854,179 - gdp DVU0763 0.53 -0.0 854,222 - gdp DVU0763 0.58 -0.3 854,230 + gdp DVU0763 0.59 +0.2 854,239 + gdp DVU0763 0.60 -0.4 854,276 + gdp DVU0763 0.63 -0.6 854,360 + gdp DVU0763 0.72 -0.0 854,360 - gdp DVU0763 0.72 -0.5 854,534 + +0.2 854,624 - -0.2 854,682 - +0.4 854,752 - +0.4 854,788 + hup-2 DVU0764 0.18 +0.7 854,801 - hup-2 DVU0764 0.23 +0.7 854,885 + hup-2 DVU0764 0.54 +0.6 854,885 + hup-2 DVU0764 0.54 +0.0 855,166 + +0.3 855,166 + +0.0 855,172 - -0.3 855,174 - -0.1 855,174 - +1.5 855,184 - -0.2 855,184 - +0.4 855,208 - +0.1 855,258 - +0.3 855,282 + +0.0 855,289 + -0.1 855,290 - -0.0 855,311 - +0.1 855,367 + DORF7327 0.23 -1.9 855,385 + DORF7327 0.30 +0.8 855,398 + DORF7327 0.35 -0.1 855,414 - DORF7327 0.41 +0.2 855,453 - DORF7327 0.55 -0.2 855,570 - -0.1 855,603 - -0.7 855,634 + -0.2 855,677 - +0.1 855,694 + -0.5 855,779 - DVU0765 0.16 -0.2 855,891 - DVU0765 0.24 -0.1 855,908 + DVU0765 0.25 +0.1 855,908 + DVU0765 0.25 -1.6 855,908 + DVU0765 0.25 -0.2 855,908 + DVU0765 0.25 +0.0
Or see this region's nucleotide sequence