Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt livM and livG overlap by 4 nucleotides livG and livF are separated by 13 nucleotides livF and DVU0717 are separated by 218 nucleotides
DVU0714: livM - branched-chain amino acid ABC transporter, permease protein (TIGR), at 793,791 to 794,744
livM
DVU0715: livG - branched-chain amino acid ABC transporter, ATP binding protein (TIGR), at 794,741 to 795,508
livG
DVU0716: livF - branched-chain amino acid ABC transporter, ATP-binding protein (TIGR), at 795,522 to 796,238
livF
DVU0717: DVU0717 - GGDEF domain/EAL domain protein (TIGR), at 796,457 to 797,965
DVU0717
Position (kb) 795
796
797 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 794.632 kb on + strand, within livM at 794.657 kb on - strand at 794.678 kb on - strand at 794.678 kb on - strand at 794.802 kb on - strand at 794.845 kb on - strand, within livG at 794.860 kb on + strand, within livG at 794.896 kb on + strand, within livG at 795.005 kb on - strand, within livG at 795.073 kb on + strand, within livG at 795.088 kb on + strand, within livG at 795.348 kb on - strand, within livG at 795.348 kb on - strand, within livG at 795.457 kb on - strand at 795.524 kb on - strand at 795.647 kb on - strand, within livF at 795.733 kb on + strand, within livF at 795.733 kb on + strand, within livF at 795.764 kb on + strand, within livF at 795.897 kb on + strand, within livF at 795.979 kb on + strand, within livF at 796.068 kb on - strand, within livF at 796.078 kb on + strand, within livF at 796.122 kb on - strand, within livF at 796.285 kb on + strand at 796.293 kb on + strand at 796.361 kb on - strand at 796.415 kb on - strand at 796.463 kb on + strand at 796.463 kb on + strand at 796.463 kb on + strand at 796.471 kb on - strand at 796.550 kb on + strand at 796.556 kb on + strand at 796.581 kb on + strand at 796.672 kb on - strand, within DVU0717 at 796.748 kb on + strand, within DVU0717 at 796.865 kb on - strand, within DVU0717 at 797.020 kb on - strand, within DVU0717 at 797.053 kb on - strand, within DVU0717 at 797.128 kb on + strand, within DVU0717
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 794,632 + livM DVU0714 0.88 -1.2 794,657 - +0.3 794,678 - -0.0 794,678 - -0.6 794,802 - +0.4 794,845 - livG DVU0715 0.14 +1.2 794,860 + livG DVU0715 0.15 -1.3 794,896 + livG DVU0715 0.20 +0.2 795,005 - livG DVU0715 0.34 -0.1 795,073 + livG DVU0715 0.43 -0.0 795,088 + livG DVU0715 0.45 -0.1 795,348 - livG DVU0715 0.79 -0.2 795,348 - livG DVU0715 0.79 +0.1 795,457 - +0.1 795,524 - +0.1 795,647 - livF DVU0716 0.17 +1.2 795,733 + livF DVU0716 0.29 -0.3 795,733 + livF DVU0716 0.29 +0.3 795,764 + livF DVU0716 0.34 +0.9 795,897 + livF DVU0716 0.52 +0.1 795,979 + livF DVU0716 0.64 +0.2 796,068 - livF DVU0716 0.76 +0.0 796,078 + livF DVU0716 0.78 -0.9 796,122 - livF DVU0716 0.84 +0.6 796,285 + -0.4 796,293 + +0.1 796,361 - -0.2 796,415 - +0.9 796,463 + -0.1 796,463 + +0.5 796,463 + +0.1 796,471 - +1.0 796,550 + +0.6 796,556 + +0.1 796,581 + -3.0 796,672 - DVU0717 0.14 +0.1 796,748 + DVU0717 0.19 -1.9 796,865 - DVU0717 0.27 -0.1 797,020 - DVU0717 0.37 -0.4 797,053 - DVU0717 0.39 -0.1 797,128 + DVU0717 0.44 +0.3
Or see this region's nucleotide sequence