Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0660
Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/5-30 mM) |
---|---|---|---|---|---|
remove | |||||
730,310 | + | +0.0 | |||
730,349 | - | -0.0 | |||
730,455 | - | DVU0659 | 0.19 | -0.0 | |
730,488 | + | DVU0659 | 0.23 | -1.3 | |
730,549 | + | DVU0659 | 0.31 | +0.2 | |
730,549 | + | DVU0659 | 0.31 | -0.7 | |
730,575 | + | DVU0659 | 0.35 | +1.1 | |
730,651 | - | DVU0659 | 0.45 | -0.1 | |
730,721 | - | DVU0659 | 0.54 | +0.2 | |
730,735 | + | DVU0659 | 0.56 | +0.1 | |
730,737 | + | DVU0659 | 0.56 | -0.0 | |
730,743 | - | DVU0659 | 0.57 | -0.2 | |
730,743 | - | DVU0659 | 0.57 | +0.2 | |
730,820 | - | DVU0659 | 0.67 | -0.6 | |
730,851 | + | DVU0659 | 0.71 | -0.1 | |
730,859 | - | DVU0659 | 0.72 | -0.2 | |
730,859 | - | DVU0659 | 0.72 | -0.2 | |
730,874 | + | DVU0659 | 0.74 | +0.4 | |
731,007 | - | -0.2 | |||
731,007 | - | +0.1 | |||
731,140 | - | -0.7 | |||
731,158 | - | +0.2 | |||
731,177 | - | -0.7 | |||
731,200 | - | -0.7 | |||
731,235 | - | -0.3 | |||
731,248 | + | +0.1 | |||
731,286 | - | -2.6 | |||
731,419 | + | DVU0660 | 0.23 | -2.0 | |
731,439 | - | DVU0660 | 0.27 | -1.9 | |
731,645 | - | DVU0660 | 0.63 | -2.1 | |
731,673 | + | DVU0660 | 0.68 | -2.1 | |
731,696 | + | DVU0660 | 0.72 | -1.8 | |
731,770 | + | DVU0660 | 0.85 | -2.3 | |
731,785 | + | DVU0660 | 0.88 | -2.7 | |
731,793 | - | DVU0660 | 0.89 | -0.2 | |
731,864 | + | +1.0 | |||
731,872 | - | -0.7 | |||
732,072 | + | +0.5 | |||
732,075 | - | -0.3 | |||
732,080 | - | +0.6 | |||
732,080 | - | -0.2 | |||
732,093 | + | -0.2 | |||
732,103 | + | -0.8 | |||
732,109 | + | -0.2 | |||
732,112 | - | -0.0 | |||
732,112 | - | -0.3 | |||
732,185 | + | DVU0661 | 0.11 | +0.1 | |
732,186 | - | DVU0661 | 0.11 | -0.8 | |
732,217 | - | DVU0661 | 0.15 | -0.5 | |
732,234 | - | DVU0661 | 0.16 | -0.2 | |
732,290 | - | DVU0661 | 0.22 | -0.2 | |
732,303 | - | DVU0661 | 0.23 | -0.1 | |
732,303 | - | DVU0661 | 0.23 | +0.6 | |
732,602 | - | DVU0661 | 0.53 | +0.4 | |
732,764 | - | DVU0661 | 0.69 | +0.7 |
Or see this region's nucleotide sequence