Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF38058

Experiment: Formate/Acetate-Sulfate (60/5-30 mM)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1888 and gmhA are separated by 135 nucleotidesgmhA and DORF38058 are separated by 20 nucleotidesDORF38058 and hemC are separated by 36 nucleotides DVU1888: DVU1888 - ATP-NAD kinase domain protein (TIGR), at 1,960,433 to 1,961,332 DVU1888 DVU1889: gmhA - phosphoheptose isomerase (TIGR), at 1,961,468 to 1,962,094 gmhA DORF38058: DORF38058 - SEED: FIG00604017: hypothetical protein, at 1,962,115 to 1,962,372 DORF38058 DVU1890: hemC - porphobilinogen deaminase (TIGR), at 1,962,409 to 1,963,356 hemC Position (kb) 1962 1963Strain fitness (log2 ratio) -1 0 1at 1961.422 kb on + strandat 1961.430 kb on - strandat 1962.332 kb on + strand, within DORF38058

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM)
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1,961,422 + -0.2
1,961,430 - -0.1
1,962,332 + DORF38058 0.84 -1.2

Or see this region's nucleotide sequence