Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF11799
Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Formate/Acetate-Sulfate (60/5-30 mM) |
---|---|---|---|---|---|
remove | |||||
1,613,310 | - | DVU1544 | 0.62 | -0.3 | |
1,613,320 | - | DVU1544 | 0.62 | -1.1 | |
1,613,457 | + | DVU1544 | 0.68 | -0.3 | |
1,613,532 | - | DVU1544 | 0.71 | -0.3 | |
1,613,851 | - | DVU1544 | 0.84 | +0.3 | |
1,614,030 | + | +1.3 | |||
1,614,076 | - | -1.2 | |||
1,614,260 | + | -0.5 | |||
1,614,260 | + | +0.5 | |||
1,614,298 | + | -0.3 | |||
1,614,316 | - | DORF11799 | 0.11 | +1.3 | |
1,614,355 | + | DORF11799 | 0.40 | +0.9 | |
1,614,408 | - | DORF11799 | 0.79 | +0.4 | |
1,614,430 | + | +1.4 | |||
1,614,452 | + | +0.3 | |||
1,614,469 | + | +0.0 | |||
1,614,469 | + | -0.9 | |||
1,614,469 | + | -0.1 | |||
1,614,469 | + | +0.2 | |||
1,614,477 | - | -0.6 | |||
1,614,477 | - | -0.4 | |||
1,614,477 | - | -0.3 | |||
1,614,495 | + | -1.8 | |||
1,614,503 | - | -0.2 | |||
1,614,620 | + | +0.0 | |||
1,614,674 | - | -0.4 | |||
1,614,812 | + | +0.0 | |||
1,614,813 | - | -0.1 | |||
1,614,828 | - | -0.6 | |||
1,614,957 | - | +0.8 | |||
1,614,995 | + | -0.1 | |||
1,614,997 | + | -0.5 | |||
1,615,005 | - | -0.6 | |||
1,615,005 | - | -0.3 | |||
1,615,036 | - | -0.1 | |||
1,615,203 | + | DVU1545 | 0.10 | -0.4 | |
1,615,386 | - | DVU1545 | 0.13 | -0.0 |
Or see this region's nucleotide sequence