Experiment: Formate/Acetate-Sulfate (60/5-30 mM)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0572 and creA are separated by 492 nucleotides creA and DORF28911 are separated by 70 nucleotides DORF28911 and DVU0575 are separated by 304 nucleotides DVU0575 and msrB are separated by 228 nucleotides
DVU0572: DVU0572 - hypothetical protein (TIGR), at 637,893 to 638,231
DVU0572
DVU0573: creA - creA protein (TIGR), at 638,724 to 639,149
creA
DORF28911: DORF28911 - SEED: FIG00602256: hypothetical protein, at 639,220 to 639,978
DORF28911
DVU0575: DVU0575 - hypothetical protein (TIGR), at 640,283 to 640,564
DVU0575
DVU0576: msrB - peptide methionine sulfoxide reductase MsrB (TIGR), at 640,793 to 641,224
msrB
Position (kb) 639
640 Strain fitness (log2 ratio) -1
0
1 at 638.247 kb on + strand at 638.275 kb on - strand at 638.282 kb on - strand at 638.309 kb on + strand at 638.316 kb on + strand at 638.324 kb on - strand at 638.335 kb on + strand at 638.471 kb on + strand at 638.480 kb on - strand at 638.499 kb on + strand at 638.507 kb on - strand at 638.531 kb on - strand at 638.544 kb on + strand at 638.629 kb on + strand at 638.648 kb on + strand at 638.697 kb on - strand at 638.704 kb on - strand at 638.709 kb on - strand at 638.741 kb on - strand at 638.873 kb on + strand, within creA at 638.948 kb on + strand, within creA at 639.003 kb on - strand, within creA at 639.076 kb on + strand, within creA at 639.079 kb on - strand, within creA at 639.106 kb on - strand, within creA at 639.111 kb on + strand at 639.111 kb on + strand at 639.113 kb on + strand at 639.158 kb on - strand at 639.206 kb on - strand at 639.237 kb on - strand at 639.383 kb on + strand, within DORF28911 at 639.388 kb on + strand, within DORF28911 at 639.398 kb on + strand, within DORF28911 at 639.497 kb on + strand, within DORF28911 at 639.604 kb on - strand, within DORF28911 at 639.642 kb on + strand, within DORF28911 at 639.792 kb on + strand, within DORF28911 at 639.915 kb on + strand at 639.915 kb on + strand at 640.156 kb on - strand at 640.257 kb on - strand at 640.312 kb on + strand, within DVU0575 at 640.340 kb on - strand, within DVU0575 at 640.350 kb on - strand, within DVU0575 at 640.361 kb on + strand, within DVU0575 at 640.400 kb on - strand, within DVU0575 at 640.417 kb on + strand, within DVU0575 at 640.541 kb on - strand at 640.541 kb on - strand at 640.641 kb on - strand at 640.642 kb on - strand at 640.690 kb on + strand at 640.748 kb on - strand at 640.784 kb on - strand at 640.817 kb on + strand at 640.897 kb on + strand, within msrB at 640.897 kb on + strand, within msrB at 640.905 kb on - strand, within msrB at 640.905 kb on - strand, within msrB
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfate (60/5-30 mM) remove 638,247 + -1.0 638,275 - +1.4 638,282 - -0.4 638,309 + -0.7 638,316 + -0.2 638,324 - -0.4 638,335 + -0.4 638,471 + -1.2 638,480 - -0.1 638,499 + -0.0 638,507 - -0.4 638,531 - -0.0 638,544 + +0.5 638,629 + -0.0 638,648 + +0.5 638,697 - +0.0 638,704 - -0.2 638,709 - -0.2 638,741 - -0.2 638,873 + creA DVU0573 0.35 -0.0 638,948 + creA DVU0573 0.53 +0.2 639,003 - creA DVU0573 0.65 -0.1 639,076 + creA DVU0573 0.83 +0.5 639,079 - creA DVU0573 0.83 -0.0 639,106 - creA DVU0573 0.90 -0.1 639,111 + -0.4 639,111 + -0.4 639,113 + -0.4 639,158 - -0.2 639,206 - +1.0 639,237 - -0.1 639,383 + DORF28911 0.21 +0.2 639,388 + DORF28911 0.22 -0.1 639,398 + DORF28911 0.23 -0.1 639,497 + DORF28911 0.36 +0.3 639,604 - DORF28911 0.51 +0.6 639,642 + DORF28911 0.56 +0.2 639,792 + DORF28911 0.75 +0.9 639,915 + -0.3 639,915 + +0.2 640,156 - +0.5 640,257 - +1.6 640,312 + DVU0575 0.10 -0.2 640,340 - DVU0575 0.20 -0.7 640,350 - DVU0575 0.24 -0.1 640,361 + DVU0575 0.28 +0.4 640,400 - DVU0575 0.41 +0.3 640,417 + DVU0575 0.48 +0.4 640,541 - -0.6 640,541 - -0.4 640,641 - -0.1 640,642 - -0.1 640,690 + +0.3 640,748 - +0.2 640,784 - -0.6 640,817 + +0.0 640,897 + msrB DVU0576 0.24 +0.0 640,897 + msrB DVU0576 0.24 -0.6 640,905 - msrB DVU0576 0.26 -0.3 640,905 - msrB DVU0576 0.26 -0.4
Or see this region's nucleotide sequence