Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3759

Experiment: L-Citrulline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3757 and Pf6N2E2_3758 overlap by 4 nucleotidesPf6N2E2_3758 and Pf6N2E2_3759 overlap by 4 nucleotidesPf6N2E2_3759 and Pf6N2E2_3760 overlap by 1 nucleotides Pf6N2E2_3757 - Type IV pilus biogenesis protein PilP, at 4,378,743 to 4,379,270 _3757 Pf6N2E2_3758 - Type IV pilus biogenesis protein PilO, at 4,379,267 to 4,379,890 _3758 Pf6N2E2_3759 - Type IV pilus biogenesis protein PilN, at 4,379,887 to 4,380,453 _3759 Pf6N2E2_3760 - Type IV pilus biogenesis protein PilM, at 4,380,453 to 4,381,517 _3760 Position (kb) 4379 4380 4381Strain fitness (log2 ratio) -2 -1 0 1 2at 4378.990 kb on + strand, within Pf6N2E2_3757at 4378.990 kb on + strand, within Pf6N2E2_3757at 4378.990 kb on + strand, within Pf6N2E2_3757at 4378.991 kb on - strand, within Pf6N2E2_3757at 4378.991 kb on - strand, within Pf6N2E2_3757at 4379.101 kb on + strand, within Pf6N2E2_3757at 4379.101 kb on + strand, within Pf6N2E2_3757at 4379.101 kb on + strand, within Pf6N2E2_3757at 4379.101 kb on + strand, within Pf6N2E2_3757at 4379.102 kb on - strand, within Pf6N2E2_3757at 4379.102 kb on - strand, within Pf6N2E2_3757at 4379.102 kb on - strand, within Pf6N2E2_3757at 4379.102 kb on - strand, within Pf6N2E2_3757at 4379.102 kb on - strand, within Pf6N2E2_3757at 4379.102 kb on - strand, within Pf6N2E2_3757at 4379.102 kb on - strand, within Pf6N2E2_3757at 4379.105 kb on + strand, within Pf6N2E2_3757at 4379.106 kb on - strand, within Pf6N2E2_3757at 4379.116 kb on + strand, within Pf6N2E2_3757at 4379.179 kb on + strand, within Pf6N2E2_3757at 4379.179 kb on + strand, within Pf6N2E2_3757at 4379.180 kb on - strand, within Pf6N2E2_3757at 4379.180 kb on - strand, within Pf6N2E2_3757at 4379.180 kb on - strand, within Pf6N2E2_3757at 4379.180 kb on - strand, within Pf6N2E2_3757at 4379.180 kb on - strand, within Pf6N2E2_3757at 4379.253 kb on - strandat 4379.253 kb on - strandat 4379.299 kb on - strandat 4379.469 kb on + strand, within Pf6N2E2_3758at 4379.469 kb on + strand, within Pf6N2E2_3758at 4379.470 kb on - strand, within Pf6N2E2_3758at 4379.542 kb on + strand, within Pf6N2E2_3758at 4379.637 kb on + strand, within Pf6N2E2_3758at 4379.637 kb on + strand, within Pf6N2E2_3758at 4379.749 kb on + strand, within Pf6N2E2_3758at 4379.749 kb on + strand, within Pf6N2E2_3758at 4379.750 kb on - strand, within Pf6N2E2_3758at 4379.750 kb on - strand, within Pf6N2E2_3758at 4379.750 kb on - strand, within Pf6N2E2_3758at 4379.752 kb on - strand, within Pf6N2E2_3758at 4380.113 kb on + strand, within Pf6N2E2_3759at 4380.113 kb on + strand, within Pf6N2E2_3759at 4380.113 kb on + strand, within Pf6N2E2_3759at 4380.113 kb on + strand, within Pf6N2E2_3759at 4380.113 kb on + strand, within Pf6N2E2_3759at 4380.113 kb on + strand, within Pf6N2E2_3759at 4380.113 kb on + strand, within Pf6N2E2_3759at 4380.113 kb on + strand, within Pf6N2E2_3759at 4380.114 kb on - strand, within Pf6N2E2_3759at 4380.114 kb on - strand, within Pf6N2E2_3759at 4380.114 kb on - strand, within Pf6N2E2_3759at 4380.114 kb on - strand, within Pf6N2E2_3759at 4380.175 kb on - strand, within Pf6N2E2_3759at 4380.291 kb on + strand, within Pf6N2E2_3759at 4380.399 kb on + strandat 4380.555 kb on - strandat 4380.555 kb on - strandat 4380.664 kb on + strand, within Pf6N2E2_3760at 4380.664 kb on + strand, within Pf6N2E2_3760at 4380.665 kb on - strand, within Pf6N2E2_3760at 4380.665 kb on - strand, within Pf6N2E2_3760at 4380.665 kb on - strand, within Pf6N2E2_3760at 4380.665 kb on - strand, within Pf6N2E2_3760at 4380.752 kb on - strand, within Pf6N2E2_3760at 4380.752 kb on - strand, within Pf6N2E2_3760at 4380.752 kb on - strand, within Pf6N2E2_3760at 4380.752 kb on - strand, within Pf6N2E2_3760at 4380.867 kb on - strand, within Pf6N2E2_3760at 4380.867 kb on - strand, within Pf6N2E2_3760at 4380.868 kb on + strand, within Pf6N2E2_3760at 4380.868 kb on + strand, within Pf6N2E2_3760at 4380.868 kb on + strand, within Pf6N2E2_3760at 4380.868 kb on + strand, within Pf6N2E2_3760at 4380.868 kb on + strand, within Pf6N2E2_3760at 4380.868 kb on + strand, within Pf6N2E2_3760at 4380.868 kb on + strand, within Pf6N2E2_3760at 4380.869 kb on - strand, within Pf6N2E2_3760at 4380.869 kb on - strand, within Pf6N2E2_3760at 4380.869 kb on - strand, within Pf6N2E2_3760at 4380.869 kb on - strand, within Pf6N2E2_3760at 4380.869 kb on - strand, within Pf6N2E2_3760at 4380.869 kb on - strand, within Pf6N2E2_3760at 4380.869 kb on - strand, within Pf6N2E2_3760at 4380.869 kb on - strand, within Pf6N2E2_3760at 4380.897 kb on - strand, within Pf6N2E2_3760at 4381.001 kb on - strand, within Pf6N2E2_3760at 4381.177 kb on + strand, within Pf6N2E2_3760at 4381.177 kb on + strand, within Pf6N2E2_3760at 4381.177 kb on + strand, within Pf6N2E2_3760at 4381.177 kb on + strand, within Pf6N2E2_3760at 4381.177 kb on + strand, within Pf6N2E2_3760at 4381.177 kb on + strand, within Pf6N2E2_3760at 4381.177 kb on + strand, within Pf6N2E2_3760at 4381.177 kb on + strand, within Pf6N2E2_3760at 4381.177 kb on + strand, within Pf6N2E2_3760at 4381.177 kb on + strand, within Pf6N2E2_3760at 4381.177 kb on + strand, within Pf6N2E2_3760at 4381.177 kb on + strand, within Pf6N2E2_3760at 4381.177 kb on + strand, within Pf6N2E2_3760at 4381.178 kb on - strand, within Pf6N2E2_3760at 4381.178 kb on - strand, within Pf6N2E2_3760at 4381.178 kb on - strand, within Pf6N2E2_3760at 4381.178 kb on - strand, within Pf6N2E2_3760at 4381.178 kb on - strand, within Pf6N2E2_3760at 4381.178 kb on - strand, within Pf6N2E2_3760at 4381.178 kb on - strand, within Pf6N2E2_3760at 4381.178 kb on - strand, within Pf6N2E2_3760at 4381.178 kb on - strand, within Pf6N2E2_3760at 4381.178 kb on - strand, within Pf6N2E2_3760at 4381.178 kb on - strand, within Pf6N2E2_3760at 4381.178 kb on - strand, within Pf6N2E2_3760at 4381.178 kb on - strand, within Pf6N2E2_3760at 4381.178 kb on - strand, within Pf6N2E2_3760at 4381.403 kb on - strand, within Pf6N2E2_3760at 4381.403 kb on - strand, within Pf6N2E2_3760

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (N)
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4,378,990 + Pf6N2E2_3757 0.47 +0.2
4,378,990 + Pf6N2E2_3757 0.47 +0.5
4,378,990 + Pf6N2E2_3757 0.47 -0.6
4,378,991 - Pf6N2E2_3757 0.47 +0.8
4,378,991 - Pf6N2E2_3757 0.47 +0.5
4,379,101 + Pf6N2E2_3757 0.68 -0.4
4,379,101 + Pf6N2E2_3757 0.68 +0.8
4,379,101 + Pf6N2E2_3757 0.68 +1.3
4,379,101 + Pf6N2E2_3757 0.68 -0.2
4,379,102 - Pf6N2E2_3757 0.68 -0.2
4,379,102 - Pf6N2E2_3757 0.68 -0.9
4,379,102 - Pf6N2E2_3757 0.68 -0.4
4,379,102 - Pf6N2E2_3757 0.68 -1.5
4,379,102 - Pf6N2E2_3757 0.68 +0.4
4,379,102 - Pf6N2E2_3757 0.68 -1.5
4,379,102 - Pf6N2E2_3757 0.68 +0.2
4,379,105 + Pf6N2E2_3757 0.69 +0.8
4,379,106 - Pf6N2E2_3757 0.69 -2.2
4,379,116 + Pf6N2E2_3757 0.71 +1.2
4,379,179 + Pf6N2E2_3757 0.83 +0.9
4,379,179 + Pf6N2E2_3757 0.83 -0.5
4,379,180 - Pf6N2E2_3757 0.83 -0.9
4,379,180 - Pf6N2E2_3757 0.83 -0.1
4,379,180 - Pf6N2E2_3757 0.83 +0.5
4,379,180 - Pf6N2E2_3757 0.83 -0.0
4,379,180 - Pf6N2E2_3757 0.83 +0.3
4,379,253 - +0.0
4,379,253 - -0.4
4,379,299 - +0.3
4,379,469 + Pf6N2E2_3758 0.32 +0.9
4,379,469 + Pf6N2E2_3758 0.32 +2.5
4,379,470 - Pf6N2E2_3758 0.33 -0.2
4,379,542 + Pf6N2E2_3758 0.44 +0.5
4,379,637 + Pf6N2E2_3758 0.59 +0.6
4,379,637 + Pf6N2E2_3758 0.59 -1.3
4,379,749 + Pf6N2E2_3758 0.77 +0.4
4,379,749 + Pf6N2E2_3758 0.77 -0.4
4,379,750 - Pf6N2E2_3758 0.77 +0.2
4,379,750 - Pf6N2E2_3758 0.77 -0.7
4,379,750 - Pf6N2E2_3758 0.77 +0.4
4,379,752 - Pf6N2E2_3758 0.78 -0.6
4,380,113 + Pf6N2E2_3759 0.40 +0.5
4,380,113 + Pf6N2E2_3759 0.40 +1.8
4,380,113 + Pf6N2E2_3759 0.40 +0.3
4,380,113 + Pf6N2E2_3759 0.40 -0.0
4,380,113 + Pf6N2E2_3759 0.40 -0.9
4,380,113 + Pf6N2E2_3759 0.40 +0.8
4,380,113 + Pf6N2E2_3759 0.40 +2.0
4,380,113 + Pf6N2E2_3759 0.40 +0.4
4,380,114 - Pf6N2E2_3759 0.40 -1.8
4,380,114 - Pf6N2E2_3759 0.40 +0.3
4,380,114 - Pf6N2E2_3759 0.40 +0.7
4,380,114 - Pf6N2E2_3759 0.40 -0.1
4,380,175 - Pf6N2E2_3759 0.51 +1.2
4,380,291 + Pf6N2E2_3759 0.71 +0.5
4,380,399 + +0.1
4,380,555 - +0.2
4,380,555 - -0.1
4,380,664 + Pf6N2E2_3760 0.20 -0.2
4,380,664 + Pf6N2E2_3760 0.20 +0.5
4,380,665 - Pf6N2E2_3760 0.20 +0.7
4,380,665 - Pf6N2E2_3760 0.20 +0.5
4,380,665 - Pf6N2E2_3760 0.20 -0.1
4,380,665 - Pf6N2E2_3760 0.20 -0.3
4,380,752 - Pf6N2E2_3760 0.28 -0.5
4,380,752 - Pf6N2E2_3760 0.28 +0.6
4,380,752 - Pf6N2E2_3760 0.28 -0.8
4,380,752 - Pf6N2E2_3760 0.28 -0.8
4,380,867 - Pf6N2E2_3760 0.39 -0.3
4,380,867 - Pf6N2E2_3760 0.39 +1.1
4,380,868 + Pf6N2E2_3760 0.39 +1.2
4,380,868 + Pf6N2E2_3760 0.39 -0.5
4,380,868 + Pf6N2E2_3760 0.39 +0.6
4,380,868 + Pf6N2E2_3760 0.39 -0.3
4,380,868 + Pf6N2E2_3760 0.39 -1.0
4,380,868 + Pf6N2E2_3760 0.39 -0.1
4,380,868 + Pf6N2E2_3760 0.39 -0.3
4,380,869 - Pf6N2E2_3760 0.39 +0.3
4,380,869 - Pf6N2E2_3760 0.39 +0.5
4,380,869 - Pf6N2E2_3760 0.39 -0.5
4,380,869 - Pf6N2E2_3760 0.39 -0.4
4,380,869 - Pf6N2E2_3760 0.39 -0.0
4,380,869 - Pf6N2E2_3760 0.39 +1.3
4,380,869 - Pf6N2E2_3760 0.39 +0.2
4,380,869 - Pf6N2E2_3760 0.39 -0.9
4,380,897 - Pf6N2E2_3760 0.42 +0.5
4,381,001 - Pf6N2E2_3760 0.51 +0.2
4,381,177 + Pf6N2E2_3760 0.68 +1.4
4,381,177 + Pf6N2E2_3760 0.68 +0.4
4,381,177 + Pf6N2E2_3760 0.68 -0.3
4,381,177 + Pf6N2E2_3760 0.68 +1.3
4,381,177 + Pf6N2E2_3760 0.68 -0.3
4,381,177 + Pf6N2E2_3760 0.68 +0.5
4,381,177 + Pf6N2E2_3760 0.68 -0.4
4,381,177 + Pf6N2E2_3760 0.68 -0.6
4,381,177 + Pf6N2E2_3760 0.68 +0.8
4,381,177 + Pf6N2E2_3760 0.68 +0.5
4,381,177 + Pf6N2E2_3760 0.68 +0.5
4,381,177 + Pf6N2E2_3760 0.68 +0.6
4,381,177 + Pf6N2E2_3760 0.68 +0.5
4,381,178 - Pf6N2E2_3760 0.68 +0.1
4,381,178 - Pf6N2E2_3760 0.68 +1.2
4,381,178 - Pf6N2E2_3760 0.68 +0.3
4,381,178 - Pf6N2E2_3760 0.68 -1.6
4,381,178 - Pf6N2E2_3760 0.68 -0.8
4,381,178 - Pf6N2E2_3760 0.68 -0.1
4,381,178 - Pf6N2E2_3760 0.68 -0.0
4,381,178 - Pf6N2E2_3760 0.68 +0.2
4,381,178 - Pf6N2E2_3760 0.68 +0.1
4,381,178 - Pf6N2E2_3760 0.68 +0.1
4,381,178 - Pf6N2E2_3760 0.68 +1.0
4,381,178 - Pf6N2E2_3760 0.68 +1.0
4,381,178 - Pf6N2E2_3760 0.68 -0.2
4,381,178 - Pf6N2E2_3760 0.68 +0.7
4,381,403 - Pf6N2E2_3760 0.89 +0.8
4,381,403 - Pf6N2E2_3760 0.89 +0.8

Or see this region's nucleotide sequence