Experiment: Pyruvate (fermenting) with L-Cysteine as sulfur source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0139 and DVUA0141 are separated by 307 nucleotides DVUA0141 and nifA-2 are separated by 597 nucleotides
DVUA0139: DVUA0139 - outer membrane autotransporter barrel domain protein (TIGR), at 181,665 to 183,644
DVUA0139
DVUA0141: DVUA0141 - hypothetical protein (TIGR), at 183,952 to 184,188
DVUA0141
DVUA0143: nifA-2 - nif-specific regulatory protein (TIGR), at 184,786 to 186,333
nifA-2
Position (kb) 183
184
185 Strain fitness (log2 ratio) -2
-1
0
1
2 at 182.996 kb on + strand, within DVUA0139 at 183.004 kb on - strand, within DVUA0139 at 183.054 kb on - strand, within DVUA0139 at 183.054 kb on - strand, within DVUA0139 at 183.054 kb on - strand, within DVUA0139 at 183.054 kb on - strand, within DVUA0139 at 183.099 kb on + strand, within DVUA0139 at 183.108 kb on - strand, within DVUA0139 at 183.115 kb on + strand, within DVUA0139 at 183.196 kb on + strand, within DVUA0139 at 183.352 kb on + strand, within DVUA0139 at 183.360 kb on - strand, within DVUA0139 at 183.360 kb on - strand, within DVUA0139 at 183.431 kb on - strand, within DVUA0139 at 183.694 kb on - strand at 184.031 kb on - strand, within DVUA0141 at 184.133 kb on + strand, within DVUA0141 at 184.156 kb on - strand, within DVUA0141 at 184.317 kb on + strand at 184.325 kb on - strand at 184.348 kb on + strand at 184.348 kb on + strand at 184.391 kb on - strand at 184.497 kb on - strand at 184.583 kb on + strand at 184.661 kb on + strand at 184.669 kb on - strand at 184.669 kb on - strand at 184.699 kb on + strand at 184.774 kb on + strand at 184.791 kb on - strand at 184.823 kb on + strand at 184.883 kb on + strand at 184.888 kb on + strand at 184.891 kb on - strand at 184.891 kb on - strand at 184.891 kb on - strand at 184.940 kb on + strand at 184.941 kb on - strand, within nifA-2 at 184.943 kb on - strand, within nifA-2 at 184.970 kb on - strand, within nifA-2 at 185.156 kb on - strand, within nifA-2 at 185.177 kb on + strand, within nifA-2
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with L-Cysteine as sulfur source remove 182,996 + DVUA0139 0.67 +0.6 183,004 - DVUA0139 0.68 -0.3 183,054 - DVUA0139 0.70 -0.3 183,054 - DVUA0139 0.70 +0.2 183,054 - DVUA0139 0.70 -0.7 183,054 - DVUA0139 0.70 +2.2 183,099 + DVUA0139 0.72 -0.9 183,108 - DVUA0139 0.73 -0.5 183,115 + DVUA0139 0.73 -0.4 183,196 + DVUA0139 0.77 -0.2 183,352 + DVUA0139 0.85 -0.7 183,360 - DVUA0139 0.86 -0.5 183,360 - DVUA0139 0.86 -0.4 183,431 - DVUA0139 0.89 -0.2 183,694 - -1.8 184,031 - DVUA0141 0.33 -0.9 184,133 + DVUA0141 0.76 -0.2 184,156 - DVUA0141 0.86 -0.4 184,317 + +0.0 184,325 - -0.6 184,348 + -0.2 184,348 + -0.0 184,391 - +0.4 184,497 - +0.2 184,583 + -0.3 184,661 + +0.2 184,669 - +0.5 184,669 - +0.1 184,699 + +0.3 184,774 + -0.0 184,791 - +0.6 184,823 + +0.2 184,883 + +1.0 184,888 + -0.7 184,891 - -0.3 184,891 - -0.5 184,891 - -0.3 184,940 + -0.1 184,941 - nifA-2 DVUA0143 0.10 +0.8 184,943 - nifA-2 DVUA0143 0.10 +0.6 184,970 - nifA-2 DVUA0143 0.12 -0.2 185,156 - nifA-2 DVUA0143 0.24 -0.5 185,177 + nifA-2 DVUA0143 0.25 -0.1
Or see this region's nucleotide sequence