Experiment: Pyruvate (fermenting) with L-Cysteine as sulfur source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0554 and DVU0555 are separated by 39 nucleotides DVU0555 and DVU0556 are separated by 27 nucleotides DVU0556 and DVU0557 overlap by 7 nucleotides DVU0557 and DORF28817 are separated by 66 nucleotides DORF28817 and DVU0560 are separated by 172 nucleotides
DVU0554: DVU0554 - NAD-dependent epimerase/dehydratase family protein (TIGR), at 623,355 to 624,293
DVU0554
DVU0555: DVU0555 - hypothetical protein (TIGR), at 624,333 to 624,587
DVU0555
DVU0556: DVU0556 - ISDvu3, transposase OrfA (TIGR), at 624,615 to 624,878
DVU0556
DVU0557: DVU0557 - ISDvu3, transposase OrfB, authentic point mutation (TIGR), at 624,872 to 625,726
DVU0557
DORF28817: DORF28817 - no description, at 625,793 to 626,467
DORF28817
DVU0560: DVU0560 - conserved domain protein (TIGR), at 626,640 to 627,134
DVU0560
Position (kb) 624
625
626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 624.293 kb on + strand at 624.545 kb on - strand, within DVU0555 at 624.551 kb on + strand, within DVU0555 at 624.559 kb on - strand, within DVU0555 at 624.817 kb on - strand, within DVU0556 at 624.952 kb on + strand at 624.976 kb on + strand, within DVU0557 at 624.998 kb on + strand, within DVU0557 at 625.031 kb on + strand, within DVU0557 at 625.088 kb on + strand, within DVU0557 at 625.110 kb on + strand, within DVU0557 at 625.397 kb on + strand, within DVU0557 at 625.405 kb on - strand, within DVU0557 at 625.445 kb on + strand, within DVU0557 at 625.447 kb on + strand, within DVU0557 at 625.455 kb on - strand, within DVU0557 at 625.455 kb on - strand, within DVU0557 at 625.455 kb on - strand, within DVU0557 at 625.804 kb on + strand at 626.264 kb on + strand, within DORF28817 at 626.312 kb on + strand, within DORF28817
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with L-Cysteine as sulfur source remove 624,293 + +0.9 624,545 - DVU0555 0.83 +0.5 624,551 + DVU0555 0.85 -1.0 624,559 - DVU0555 0.89 +0.4 624,817 - DVU0556 0.77 -2.9 624,952 + +0.2 624,976 + DVU0557 0.12 -0.9 624,998 + DVU0557 0.15 -0.2 625,031 + DVU0557 0.19 +0.1 625,088 + DVU0557 0.25 -0.1 625,110 + DVU0557 0.28 +0.5 625,397 + DVU0557 0.61 +1.8 625,405 - DVU0557 0.62 +0.1 625,445 + DVU0557 0.67 -0.2 625,447 + DVU0557 0.67 -0.2 625,455 - DVU0557 0.68 +0.1 625,455 - DVU0557 0.68 +0.2 625,455 - DVU0557 0.68 -0.5 625,804 + -0.1 626,264 + DORF28817 0.70 -0.1 626,312 + DORF28817 0.77 +0.5
Or see this region's nucleotide sequence