Experiment: Pyruvate (fermenting) with L-Cysteine as sulfur source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flr and glnH are separated by 243 nucleotides glnH and DVU0387 are separated by 141 nucleotides DVU0387 and DVU0388 are separated by 8 nucleotides
DVU0384: flr - flavoredoxin (TIGR), at 433,812 to 434,384
flr
DVU0386: glnH - amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR), at 434,628 to 435,377
glnH
DVU0387: DVU0387 - amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR), at 435,519 to 436,196
DVU0387
DVU0388: DVU0388 - amino acid ABC transporter, ATP-binding protein (TIGR), at 436,205 to 436,972
DVU0388
Position (kb) 434
435
436 Strain fitness (log2 ratio) -1
0
1
2
3 at 433.634 kb on - strand at 433.644 kb on + strand at 433.656 kb on - strand at 433.656 kb on - strand at 433.741 kb on + strand at 433.741 kb on + strand at 433.766 kb on - strand at 433.936 kb on + strand, within flr at 433.936 kb on - strand, within flr at 433.997 kb on - strand, within flr at 434.052 kb on + strand, within flr at 434.101 kb on + strand, within flr at 434.174 kb on + strand, within flr at 434.226 kb on + strand, within flr at 434.264 kb on - strand, within flr at 434.269 kb on - strand, within flr at 434.298 kb on - strand, within flr at 434.393 kb on + strand at 434.398 kb on + strand at 434.401 kb on - strand at 434.642 kb on + strand at 434.702 kb on - strand at 434.739 kb on + strand, within glnH at 434.824 kb on + strand, within glnH at 434.831 kb on + strand, within glnH at 434.838 kb on + strand, within glnH at 434.854 kb on + strand, within glnH at 434.864 kb on - strand, within glnH at 434.896 kb on + strand, within glnH at 434.901 kb on + strand, within glnH at 434.930 kb on + strand, within glnH at 434.951 kb on + strand, within glnH at 434.959 kb on - strand, within glnH at 435.100 kb on + strand, within glnH at 435.101 kb on - strand, within glnH at 435.174 kb on + strand, within glnH at 435.174 kb on + strand, within glnH at 435.307 kb on - strand at 435.320 kb on + strand at 435.328 kb on - strand at 435.391 kb on + strand at 435.391 kb on - strand at 435.399 kb on - strand at 435.594 kb on + strand, within DVU0387 at 435.594 kb on + strand, within DVU0387 at 435.594 kb on + strand, within DVU0387 at 435.627 kb on + strand, within DVU0387 at 435.627 kb on + strand, within DVU0387 at 435.650 kb on + strand, within DVU0387 at 435.650 kb on + strand, within DVU0387 at 435.658 kb on - strand, within DVU0387 at 435.658 kb on - strand, within DVU0387 at 435.658 kb on - strand, within DVU0387 at 435.658 kb on - strand, within DVU0387 at 435.658 kb on - strand, within DVU0387 at 435.677 kb on - strand, within DVU0387 at 435.796 kb on + strand, within DVU0387 at 435.852 kb on + strand, within DVU0387 at 435.875 kb on + strand, within DVU0387 at 435.896 kb on + strand, within DVU0387 at 435.920 kb on + strand, within DVU0387 at 435.928 kb on - strand, within DVU0387 at 435.979 kb on + strand, within DVU0387 at 435.987 kb on - strand, within DVU0387 at 435.989 kb on + strand, within DVU0387 at 436.074 kb on - strand, within DVU0387 at 436.112 kb on - strand, within DVU0387 at 436.137 kb on - strand at 436.215 kb on + strand at 436.228 kb on - strand at 436.229 kb on - strand at 436.266 kb on + strand at 436.324 kb on - strand, within DVU0388 at 436.360 kb on - strand, within DVU0388 at 436.360 kb on - strand, within DVU0388 at 436.362 kb on + strand, within DVU0388
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with L-Cysteine as sulfur source remove 433,634 - +0.1 433,644 + -0.2 433,656 - +0.4 433,656 - -0.5 433,741 + -0.6 433,741 + -0.3 433,766 - -0.4 433,936 + flr DVU0384 0.22 -0.1 433,936 - flr DVU0384 0.22 +0.4 433,997 - flr DVU0384 0.32 -1.1 434,052 + flr DVU0384 0.42 +1.4 434,101 + flr DVU0384 0.50 +0.6 434,174 + flr DVU0384 0.63 -1.0 434,226 + flr DVU0384 0.72 -0.1 434,264 - flr DVU0384 0.79 -0.4 434,269 - flr DVU0384 0.80 +1.0 434,298 - flr DVU0384 0.85 -0.2 434,393 + -0.0 434,398 + -0.4 434,401 - +0.1 434,642 + -0.0 434,702 - -0.1 434,739 + glnH DVU0386 0.15 -0.5 434,824 + glnH DVU0386 0.26 +1.4 434,831 + glnH DVU0386 0.27 -0.8 434,838 + glnH DVU0386 0.28 -0.1 434,854 + glnH DVU0386 0.30 +0.4 434,864 - glnH DVU0386 0.31 -0.1 434,896 + glnH DVU0386 0.36 +0.1 434,901 + glnH DVU0386 0.36 +0.7 434,930 + glnH DVU0386 0.40 -0.0 434,951 + glnH DVU0386 0.43 -0.5 434,959 - glnH DVU0386 0.44 +0.4 435,100 + glnH DVU0386 0.63 +0.2 435,101 - glnH DVU0386 0.63 -0.5 435,174 + glnH DVU0386 0.73 +2.9 435,174 + glnH DVU0386 0.73 +0.8 435,307 - +0.3 435,320 + -0.6 435,328 - +1.1 435,391 + -0.1 435,391 - +1.3 435,399 - -0.5 435,594 + DVU0387 0.11 -1.2 435,594 + DVU0387 0.11 -1.6 435,594 + DVU0387 0.11 +1.0 435,627 + DVU0387 0.16 -0.4 435,627 + DVU0387 0.16 -0.5 435,650 + DVU0387 0.19 -0.2 435,650 + DVU0387 0.19 +0.2 435,658 - DVU0387 0.21 -0.2 435,658 - DVU0387 0.21 -1.3 435,658 - DVU0387 0.21 -0.9 435,658 - DVU0387 0.21 +0.1 435,658 - DVU0387 0.21 -0.4 435,677 - DVU0387 0.23 -0.2 435,796 + DVU0387 0.41 +2.2 435,852 + DVU0387 0.49 +0.3 435,875 + DVU0387 0.53 +0.7 435,896 + DVU0387 0.56 -0.2 435,920 + DVU0387 0.59 +0.7 435,928 - DVU0387 0.60 -0.4 435,979 + DVU0387 0.68 +0.2 435,987 - DVU0387 0.69 -0.2 435,989 + DVU0387 0.69 +0.1 436,074 - DVU0387 0.82 +0.0 436,112 - DVU0387 0.87 +0.3 436,137 - -0.1 436,215 + -0.4 436,228 - -0.5 436,229 - -0.7 436,266 + +0.0 436,324 - DVU0388 0.15 -0.4 436,360 - DVU0388 0.20 -0.0 436,360 - DVU0388 0.20 -0.4 436,362 + DVU0388 0.20 +0.0
Or see this region's nucleotide sequence