Experiment: Pyruvate (fermenting) with L-Cysteine as sulfur source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0042 and fliQ are separated by 239 nucleotides fliQ and fliP are separated by 16 nucleotides fliP and DVU0045 are separated by 28 nucleotides DVU0045 and fliN overlap by 8 nucleotides
DVU0042: DVU0042 - RNA methyltransferase, TrmH family, group 3 (TIGR), at 49,565 to 50,314
DVU0042
DVU0043: fliQ - flagellar biosynthetic protein FliQ (TIGR), at 50,554 to 50,823
fliQ
DVU0044: fliP - flagellar biosynthetic protein fliP (TIGR), at 50,840 to 51,547
fliP
DVU0045: DVU0045 - flagellar biosynthesis protein, FliO, putative (TIGR), at 51,576 to 52,097
DVU0045
DVU0046: fliN - flagellar motor switch protein FliN (TIGR), at 52,090 to 52,602
fliN
Position (kb) 50
51
52 Strain fitness (log2 ratio) -1
0
1
2
3 at 49.874 kb on - strand, within DVU0042 at 49.874 kb on - strand, within DVU0042 at 49.877 kb on + strand, within DVU0042 at 49.930 kb on - strand, within DVU0042 at 49.932 kb on + strand, within DVU0042 at 49.987 kb on - strand, within DVU0042 at 50.057 kb on - strand, within DVU0042 at 50.139 kb on - strand, within DVU0042 at 50.175 kb on - strand, within DVU0042 at 50.189 kb on - strand, within DVU0042 at 50.200 kb on + strand, within DVU0042 at 50.220 kb on + strand, within DVU0042 at 50.220 kb on + strand, within DVU0042 at 50.220 kb on + strand, within DVU0042 at 50.220 kb on + strand, within DVU0042 at 50.268 kb on - strand at 50.511 kb on + strand at 50.513 kb on + strand at 50.513 kb on + strand at 50.513 kb on + strand at 50.521 kb on - strand at 50.542 kb on - strand at 50.592 kb on + strand, within fliQ at 50.599 kb on - strand, within fliQ at 50.606 kb on + strand, within fliQ at 50.661 kb on + strand, within fliQ at 50.770 kb on - strand, within fliQ at 50.770 kb on - strand, within fliQ at 50.778 kb on + strand, within fliQ at 50.878 kb on + strand at 50.952 kb on - strand, within fliP at 50.986 kb on + strand, within fliP at 51.104 kb on - strand, within fliP at 51.220 kb on - strand, within fliP at 51.241 kb on - strand, within fliP at 51.243 kb on - strand, within fliP at 51.321 kb on - strand, within fliP at 51.390 kb on - strand, within fliP at 51.410 kb on + strand, within fliP at 51.467 kb on - strand, within fliP at 51.527 kb on - strand at 51.542 kb on - strand at 51.565 kb on + strand at 51.619 kb on + strand at 51.619 kb on - strand at 51.686 kb on + strand, within DVU0045 at 51.694 kb on - strand, within DVU0045 at 51.702 kb on + strand, within DVU0045 at 51.855 kb on + strand, within DVU0045 at 51.863 kb on - strand, within DVU0045 at 52.022 kb on - strand, within DVU0045 at 52.029 kb on - strand, within DVU0045 at 52.033 kb on - strand, within DVU0045 at 52.118 kb on + strand at 52.162 kb on + strand, within fliN at 52.212 kb on - strand, within fliN at 52.226 kb on + strand, within fliN at 52.236 kb on + strand, within fliN at 52.257 kb on - strand, within fliN at 52.267 kb on - strand, within fliN at 52.335 kb on + strand, within fliN at 52.391 kb on + strand, within fliN at 52.392 kb on - strand, within fliN at 52.476 kb on + strand, within fliN at 52.527 kb on + strand, within fliN at 52.528 kb on + strand, within fliN
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with L-Cysteine as sulfur source remove 49,874 - DVU0042 0.41 -0.6 49,874 - DVU0042 0.41 -0.0 49,877 + DVU0042 0.42 -0.5 49,930 - DVU0042 0.49 +0.2 49,932 + DVU0042 0.49 -0.2 49,987 - DVU0042 0.56 +0.0 50,057 - DVU0042 0.66 +0.1 50,139 - DVU0042 0.77 -0.2 50,175 - DVU0042 0.81 -0.7 50,189 - DVU0042 0.83 +0.7 50,200 + DVU0042 0.85 -0.4 50,220 + DVU0042 0.87 -0.7 50,220 + DVU0042 0.87 -0.7 50,220 + DVU0042 0.87 -0.1 50,220 + DVU0042 0.87 +0.2 50,268 - -0.0 50,511 + -0.2 50,513 + +0.2 50,513 + +1.3 50,513 + -0.1 50,521 - -1.1 50,542 - -0.1 50,592 + fliQ DVU0043 0.14 +2.3 50,599 - fliQ DVU0043 0.17 +2.2 50,606 + fliQ DVU0043 0.19 +2.0 50,661 + fliQ DVU0043 0.40 +2.4 50,770 - fliQ DVU0043 0.80 +2.4 50,770 - fliQ DVU0043 0.80 +2.1 50,778 + fliQ DVU0043 0.83 +2.5 50,878 + +2.3 50,952 - fliP DVU0044 0.16 +1.9 50,986 + fliP DVU0044 0.21 +1.7 51,104 - fliP DVU0044 0.37 +1.8 51,220 - fliP DVU0044 0.54 +2.3 51,241 - fliP DVU0044 0.57 +1.9 51,243 - fliP DVU0044 0.57 +2.5 51,321 - fliP DVU0044 0.68 +2.2 51,390 - fliP DVU0044 0.78 +2.3 51,410 + fliP DVU0044 0.81 +1.9 51,467 - fliP DVU0044 0.89 +2.5 51,527 - +2.2 51,542 - +1.3 51,565 + +1.9 51,619 + +2.1 51,619 - +0.9 51,686 + DVU0045 0.21 +2.4 51,694 - DVU0045 0.23 +0.6 51,702 + DVU0045 0.24 +2.8 51,855 + DVU0045 0.53 +2.2 51,863 - DVU0045 0.55 +2.3 52,022 - DVU0045 0.85 +1.0 52,029 - DVU0045 0.87 +0.7 52,033 - DVU0045 0.88 +2.0 52,118 + +1.9 52,162 + fliN DVU0046 0.14 +1.9 52,212 - fliN DVU0046 0.24 +1.8 52,226 + fliN DVU0046 0.27 +1.8 52,236 + fliN DVU0046 0.28 +2.3 52,257 - fliN DVU0046 0.33 +0.7 52,267 - fliN DVU0046 0.35 +1.4 52,335 + fliN DVU0046 0.48 +2.2 52,391 + fliN DVU0046 0.59 +1.1 52,392 - fliN DVU0046 0.59 +1.7 52,476 + fliN DVU0046 0.75 +2.0 52,527 + fliN DVU0046 0.85 +0.6 52,528 + fliN DVU0046 0.85 +2.1
Or see this region's nucleotide sequence