Experiment: Pyruvate (fermenting) with L-Cysteine as sulfur source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dctM and DVU0010 overlap by 4 nucleotides DVU0010 and DVU0011 are separated by 61 nucleotides
DVU0009: dctM - DedA family protein (TIGR), at 11,681 to 12,961
dctM
DVU0010: DVU0010 - TRAP transporter, DctQ family (TIGR), at 12,958 to 13,524
DVU0010
DVU0011: DVU0011 - TRAP dicarboxylate family transporter (TIGR), at 13,586 to 14,611
DVU0011
Position (kb) 12
13
14 Strain fitness (log2 ratio) -1
0
1
2
3 at 11.977 kb on - strand, within dctM at 12.095 kb on - strand, within dctM at 12.096 kb on + strand, within dctM at 12.133 kb on - strand, within dctM at 12.214 kb on + strand, within dctM at 12.222 kb on + strand, within dctM at 12.222 kb on + strand, within dctM at 12.227 kb on + strand, within dctM at 12.230 kb on - strand, within dctM at 12.248 kb on - strand, within dctM at 12.301 kb on - strand, within dctM at 12.331 kb on - strand, within dctM at 12.385 kb on - strand, within dctM at 12.417 kb on + strand, within dctM at 12.425 kb on - strand, within dctM at 12.547 kb on - strand, within dctM at 12.547 kb on - strand, within dctM at 12.547 kb on - strand, within dctM at 12.554 kb on + strand, within dctM at 12.578 kb on + strand, within dctM at 12.641 kb on - strand, within dctM at 12.641 kb on - strand, within dctM at 12.665 kb on + strand, within dctM at 12.670 kb on - strand, within dctM at 12.698 kb on - strand, within dctM at 12.698 kb on - strand, within dctM at 12.753 kb on + strand, within dctM at 12.771 kb on + strand, within dctM at 12.811 kb on - strand, within dctM at 12.965 kb on - strand at 12.965 kb on - strand at 12.986 kb on - strand at 13.000 kb on - strand at 13.055 kb on + strand, within DVU0010 at 13.081 kb on - strand, within DVU0010 at 13.117 kb on - strand, within DVU0010 at 13.126 kb on - strand, within DVU0010 at 13.162 kb on - strand, within DVU0010 at 13.188 kb on - strand, within DVU0010 at 13.194 kb on + strand, within DVU0010 at 13.305 kb on + strand, within DVU0010 at 13.448 kb on + strand, within DVU0010 at 13.448 kb on + strand, within DVU0010 at 13.448 kb on + strand, within DVU0010 at 13.456 kb on - strand, within DVU0010 at 13.500 kb on + strand at 13.587 kb on + strand at 13.595 kb on - strand at 13.596 kb on - strand at 13.649 kb on - strand at 13.664 kb on - strand at 13.728 kb on + strand, within DVU0011 at 13.746 kb on - strand, within DVU0011 at 13.746 kb on - strand, within DVU0011 at 13.788 kb on - strand, within DVU0011 at 13.808 kb on + strand, within DVU0011 at 13.839 kb on + strand, within DVU0011 at 13.839 kb on + strand, within DVU0011 at 13.847 kb on - strand, within DVU0011 at 13.847 kb on - strand, within DVU0011 at 13.854 kb on + strand, within DVU0011 at 13.863 kb on + strand, within DVU0011 at 13.873 kb on + strand, within DVU0011 at 13.873 kb on - strand, within DVU0011 at 13.878 kb on + strand, within DVU0011 at 13.881 kb on - strand, within DVU0011 at 13.883 kb on + strand, within DVU0011 at 13.936 kb on - strand, within DVU0011 at 14.003 kb on + strand, within DVU0011 at 14.003 kb on + strand, within DVU0011 at 14.005 kb on + strand, within DVU0011 at 14.017 kb on + strand, within DVU0011 at 14.048 kb on + strand, within DVU0011 at 14.161 kb on - strand, within DVU0011 at 14.168 kb on - strand, within DVU0011 at 14.186 kb on + strand, within DVU0011 at 14.190 kb on - strand, within DVU0011 at 14.252 kb on - strand, within DVU0011 at 14.328 kb on + strand, within DVU0011 at 14.328 kb on + strand, within DVU0011 at 14.328 kb on + strand, within DVU0011 at 14.328 kb on + strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.336 kb on - strand, within DVU0011 at 14.354 kb on + strand, within DVU0011 at 14.379 kb on + strand, within DVU0011 at 14.389 kb on + strand, within DVU0011 at 14.394 kb on + strand, within DVU0011 at 14.394 kb on + strand, within DVU0011 at 14.402 kb on - strand, within DVU0011 at 14.407 kb on + strand, within DVU0011 at 14.458 kb on - strand, within DVU0011 at 14.490 kb on + strand, within DVU0011 at 14.495 kb on + strand, within DVU0011 at 14.498 kb on - strand, within DVU0011
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with L-Cysteine as sulfur source remove 11,977 - dctM DVU0009 0.23 -0.9 12,095 - dctM DVU0009 0.32 -0.9 12,096 + dctM DVU0009 0.32 -0.4 12,133 - dctM DVU0009 0.35 -0.1 12,214 + dctM DVU0009 0.42 +0.2 12,222 + dctM DVU0009 0.42 -0.6 12,222 + dctM DVU0009 0.42 -0.2 12,227 + dctM DVU0009 0.43 -1.0 12,230 - dctM DVU0009 0.43 -0.0 12,248 - dctM DVU0009 0.44 -0.7 12,301 - dctM DVU0009 0.48 -0.8 12,331 - dctM DVU0009 0.51 +0.6 12,385 - dctM DVU0009 0.55 +0.8 12,417 + dctM DVU0009 0.57 -0.2 12,425 - dctM DVU0009 0.58 +0.0 12,547 - dctM DVU0009 0.68 -1.0 12,547 - dctM DVU0009 0.68 -0.3 12,547 - dctM DVU0009 0.68 -0.2 12,554 + dctM DVU0009 0.68 +0.3 12,578 + dctM DVU0009 0.70 +0.1 12,641 - dctM DVU0009 0.75 -0.3 12,641 - dctM DVU0009 0.75 +1.3 12,665 + dctM DVU0009 0.77 -0.1 12,670 - dctM DVU0009 0.77 -0.1 12,698 - dctM DVU0009 0.79 +1.6 12,698 - dctM DVU0009 0.79 -0.0 12,753 + dctM DVU0009 0.84 -0.7 12,771 + dctM DVU0009 0.85 +0.1 12,811 - dctM DVU0009 0.88 +0.9 12,965 - -0.1 12,965 - +0.2 12,986 - +1.2 13,000 - -0.6 13,055 + DVU0010 0.17 -0.5 13,081 - DVU0010 0.22 -1.3 13,117 - DVU0010 0.28 +1.1 13,126 - DVU0010 0.30 -0.1 13,162 - DVU0010 0.36 +1.2 13,188 - DVU0010 0.41 -0.3 13,194 + DVU0010 0.42 +0.2 13,305 + DVU0010 0.61 -0.3 13,448 + DVU0010 0.86 -0.7 13,448 + DVU0010 0.86 -1.1 13,448 + DVU0010 0.86 -1.0 13,456 - DVU0010 0.88 -1.2 13,500 + +2.1 13,587 + -0.4 13,595 - -1.0 13,596 - -0.1 13,649 - -0.0 13,664 - +0.1 13,728 + DVU0011 0.14 +0.2 13,746 - DVU0011 0.16 -0.9 13,746 - DVU0011 0.16 -0.2 13,788 - DVU0011 0.20 -0.9 13,808 + DVU0011 0.22 +0.5 13,839 + DVU0011 0.25 +0.6 13,839 + DVU0011 0.25 +1.1 13,847 - DVU0011 0.25 -0.2 13,847 - DVU0011 0.25 -0.1 13,854 + DVU0011 0.26 -0.3 13,863 + DVU0011 0.27 -0.2 13,873 + DVU0011 0.28 +0.3 13,873 - DVU0011 0.28 -0.2 13,878 + DVU0011 0.28 -0.1 13,881 - DVU0011 0.29 +0.1 13,883 + DVU0011 0.29 -0.4 13,936 - DVU0011 0.34 -0.0 14,003 + DVU0011 0.41 -0.6 14,003 + DVU0011 0.41 +0.3 14,005 + DVU0011 0.41 +0.3 14,017 + DVU0011 0.42 +0.2 14,048 + DVU0011 0.45 +0.4 14,161 - DVU0011 0.56 +1.5 14,168 - DVU0011 0.57 -0.1 14,186 + DVU0011 0.58 +0.7 14,190 - DVU0011 0.59 -0.1 14,252 - DVU0011 0.65 +0.3 14,328 + DVU0011 0.72 -0.4 14,328 + DVU0011 0.72 +2.9 14,328 + DVU0011 0.72 +1.1 14,328 + DVU0011 0.72 -0.4 14,336 - DVU0011 0.73 +0.7 14,336 - DVU0011 0.73 -0.1 14,336 - DVU0011 0.73 -0.5 14,336 - DVU0011 0.73 +0.3 14,336 - DVU0011 0.73 -1.3 14,354 + DVU0011 0.75 -0.0 14,379 + DVU0011 0.77 -0.2 14,389 + DVU0011 0.78 -0.7 14,394 + DVU0011 0.79 -0.0 14,394 + DVU0011 0.79 +0.2 14,402 - DVU0011 0.80 -0.3 14,407 + DVU0011 0.80 -1.6 14,458 - DVU0011 0.85 -0.3 14,490 + DVU0011 0.88 +0.0 14,495 + DVU0011 0.89 -0.3 14,498 - DVU0011 0.89 -1.0
Or see this region's nucleotide sequence