Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1722

Experiment: Pyruvate (fermenting) with L-Cysteine as sulfur source

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1721 and DVU1722 are separated by 0 nucleotidesDVU1722 and DVU1723 are separated by 254 nucleotidesDVU1723 and DVU1724 overlap by 4 nucleotides DVU1721: DVU1721 - hypothetical protein (TIGR), at 1,794,775 to 1,796,427 DVU1721 DVU1722: DVU1722 - hypothetical protein (TIGR), at 1,796,428 to 1,796,523 DVU1722 DVU1723: DVU1723 - hypothetical protein (TIGR), at 1,796,778 to 1,797,332 DVU1723 DVU1724: DVU1724 - phage uncharacterized protein, putative (TIGR), at 1,797,329 to 1,798,933 DVU1724 Position (kb) 1796 1797Strain fitness (log2 ratio) -2 -1 0 1 2at 1795.431 kb on + strand, within DVU1721at 1795.591 kb on + strand, within DVU1721at 1795.626 kb on + strand, within DVU1721at 1795.697 kb on - strand, within DVU1721at 1795.780 kb on - strand, within DVU1721at 1795.795 kb on - strand, within DVU1721at 1795.807 kb on + strand, within DVU1721at 1795.815 kb on - strand, within DVU1721at 1795.815 kb on - strand, within DVU1721at 1795.831 kb on - strand, within DVU1721at 1795.856 kb on - strand, within DVU1721at 1795.899 kb on - strand, within DVU1721at 1795.913 kb on + strand, within DVU1721at 1795.984 kb on - strand, within DVU1721at 1796.011 kb on + strand, within DVU1721at 1796.153 kb on + strand, within DVU1721at 1796.226 kb on + strand, within DVU1721at 1796.259 kb on + strand, within DVU1721at 1796.267 kb on - strandat 1796.282 kb on - strandat 1796.284 kb on - strandat 1796.301 kb on - strandat 1796.388 kb on - strandat 1796.405 kb on + strandat 1796.410 kb on + strandat 1796.497 kb on + strand, within DVU1722at 1796.505 kb on - strand, within DVU1722at 1796.510 kb on - strand, within DVU1722at 1796.545 kb on - strandat 1796.721 kb on + strandat 1796.793 kb on - strandat 1796.793 kb on - strandat 1796.795 kb on + strandat 1796.863 kb on - strand, within DVU1723at 1796.879 kb on - strand, within DVU1723at 1796.901 kb on + strand, within DVU1723at 1796.901 kb on + strand, within DVU1723at 1796.909 kb on - strand, within DVU1723at 1796.909 kb on - strand, within DVU1723at 1796.909 kb on - strand, within DVU1723at 1796.916 kb on + strand, within DVU1723at 1796.924 kb on - strand, within DVU1723at 1796.926 kb on + strand, within DVU1723at 1797.023 kb on - strand, within DVU1723at 1797.105 kb on + strand, within DVU1723at 1797.153 kb on + strand, within DVU1723at 1797.200 kb on - strand, within DVU1723at 1797.225 kb on + strand, within DVU1723at 1797.232 kb on + strand, within DVU1723at 1797.233 kb on - strand, within DVU1723at 1797.453 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with L-Cysteine as sulfur source
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1,795,431 + DVU1721 0.40 -0.0
1,795,591 + DVU1721 0.49 +0.2
1,795,626 + DVU1721 0.51 -0.4
1,795,697 - DVU1721 0.56 -0.1
1,795,780 - DVU1721 0.61 -2.3
1,795,795 - DVU1721 0.62 -0.4
1,795,807 + DVU1721 0.62 -0.2
1,795,815 - DVU1721 0.63 +0.3
1,795,815 - DVU1721 0.63 -0.2
1,795,831 - DVU1721 0.64 -0.5
1,795,856 - DVU1721 0.65 -0.2
1,795,899 - DVU1721 0.68 -0.4
1,795,913 + DVU1721 0.69 +0.2
1,795,984 - DVU1721 0.73 -0.6
1,796,011 + DVU1721 0.75 -0.3
1,796,153 + DVU1721 0.83 -0.1
1,796,226 + DVU1721 0.88 -0.1
1,796,259 + DVU1721 0.90 -1.4
1,796,267 - -0.1
1,796,282 - -0.0
1,796,284 - +0.0
1,796,301 - -0.4
1,796,388 - -0.7
1,796,405 + +0.0
1,796,410 + +0.1
1,796,497 + DVU1722 0.72 -0.7
1,796,505 - DVU1722 0.80 -1.1
1,796,510 - DVU1722 0.85 -0.2
1,796,545 - +0.6
1,796,721 + +0.7
1,796,793 - -0.3
1,796,793 - -0.1
1,796,795 + +0.1
1,796,863 - DVU1723 0.15 +0.0
1,796,879 - DVU1723 0.18 -0.3
1,796,901 + DVU1723 0.22 +1.9
1,796,901 + DVU1723 0.22 +0.5
1,796,909 - DVU1723 0.24 +0.1
1,796,909 - DVU1723 0.24 -0.1
1,796,909 - DVU1723 0.24 +2.0
1,796,916 + DVU1723 0.25 +0.8
1,796,924 - DVU1723 0.26 +0.2
1,796,926 + DVU1723 0.27 -0.5
1,797,023 - DVU1723 0.44 -1.1
1,797,105 + DVU1723 0.59 +0.0
1,797,153 + DVU1723 0.68 -0.4
1,797,200 - DVU1723 0.76 -0.1
1,797,225 + DVU1723 0.81 +0.6
1,797,232 + DVU1723 0.82 -0.1
1,797,233 - DVU1723 0.82 +0.6
1,797,453 - +0.5

Or see this region's nucleotide sequence