Experiment: Pyruvate (fermenting) with L-Cysteine as sulfur source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1721 and DVU1722 are separated by 0 nucleotides DVU1722 and DVU1723 are separated by 254 nucleotides DVU1723 and DVU1724 overlap by 4 nucleotides
DVU1721: DVU1721 - hypothetical protein (TIGR), at 1,794,775 to 1,796,427
DVU1721
DVU1722: DVU1722 - hypothetical protein (TIGR), at 1,796,428 to 1,796,523
DVU1722
DVU1723: DVU1723 - hypothetical protein (TIGR), at 1,796,778 to 1,797,332
DVU1723
DVU1724: DVU1724 - phage uncharacterized protein, putative (TIGR), at 1,797,329 to 1,798,933
DVU1724
Position (kb)
1796
1797 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1795.431 kb on + strand, within DVU1721 at 1795.591 kb on + strand, within DVU1721 at 1795.626 kb on + strand, within DVU1721 at 1795.697 kb on - strand, within DVU1721 at 1795.780 kb on - strand, within DVU1721 at 1795.795 kb on - strand, within DVU1721 at 1795.807 kb on + strand, within DVU1721 at 1795.815 kb on - strand, within DVU1721 at 1795.815 kb on - strand, within DVU1721 at 1795.831 kb on - strand, within DVU1721 at 1795.856 kb on - strand, within DVU1721 at 1795.899 kb on - strand, within DVU1721 at 1795.913 kb on + strand, within DVU1721 at 1795.984 kb on - strand, within DVU1721 at 1796.011 kb on + strand, within DVU1721 at 1796.153 kb on + strand, within DVU1721 at 1796.226 kb on + strand, within DVU1721 at 1796.259 kb on + strand, within DVU1721 at 1796.267 kb on - strand at 1796.282 kb on - strand at 1796.284 kb on - strand at 1796.301 kb on - strand at 1796.388 kb on - strand at 1796.405 kb on + strand at 1796.410 kb on + strand at 1796.497 kb on + strand, within DVU1722 at 1796.505 kb on - strand, within DVU1722 at 1796.510 kb on - strand, within DVU1722 at 1796.545 kb on - strand at 1796.721 kb on + strand at 1796.793 kb on - strand at 1796.793 kb on - strand at 1796.795 kb on + strand at 1796.863 kb on - strand, within DVU1723 at 1796.879 kb on - strand, within DVU1723 at 1796.901 kb on + strand, within DVU1723 at 1796.901 kb on + strand, within DVU1723 at 1796.909 kb on - strand, within DVU1723 at 1796.909 kb on - strand, within DVU1723 at 1796.909 kb on - strand, within DVU1723 at 1796.916 kb on + strand, within DVU1723 at 1796.924 kb on - strand, within DVU1723 at 1796.926 kb on + strand, within DVU1723 at 1797.023 kb on - strand, within DVU1723 at 1797.105 kb on + strand, within DVU1723 at 1797.153 kb on + strand, within DVU1723 at 1797.200 kb on - strand, within DVU1723 at 1797.225 kb on + strand, within DVU1723 at 1797.232 kb on + strand, within DVU1723 at 1797.233 kb on - strand, within DVU1723 at 1797.453 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with L-Cysteine as sulfur source remove 1,795,431 + DVU1721 0.40 -0.0 1,795,591 + DVU1721 0.49 +0.2 1,795,626 + DVU1721 0.51 -0.4 1,795,697 - DVU1721 0.56 -0.1 1,795,780 - DVU1721 0.61 -2.3 1,795,795 - DVU1721 0.62 -0.4 1,795,807 + DVU1721 0.62 -0.2 1,795,815 - DVU1721 0.63 +0.3 1,795,815 - DVU1721 0.63 -0.2 1,795,831 - DVU1721 0.64 -0.5 1,795,856 - DVU1721 0.65 -0.2 1,795,899 - DVU1721 0.68 -0.4 1,795,913 + DVU1721 0.69 +0.2 1,795,984 - DVU1721 0.73 -0.6 1,796,011 + DVU1721 0.75 -0.3 1,796,153 + DVU1721 0.83 -0.1 1,796,226 + DVU1721 0.88 -0.1 1,796,259 + DVU1721 0.90 -1.4 1,796,267 - -0.1 1,796,282 - -0.0 1,796,284 - +0.0 1,796,301 - -0.4 1,796,388 - -0.7 1,796,405 + +0.0 1,796,410 + +0.1 1,796,497 + DVU1722 0.72 -0.7 1,796,505 - DVU1722 0.80 -1.1 1,796,510 - DVU1722 0.85 -0.2 1,796,545 - +0.6 1,796,721 + +0.7 1,796,793 - -0.3 1,796,793 - -0.1 1,796,795 + +0.1 1,796,863 - DVU1723 0.15 +0.0 1,796,879 - DVU1723 0.18 -0.3 1,796,901 + DVU1723 0.22 +1.9 1,796,901 + DVU1723 0.22 +0.5 1,796,909 - DVU1723 0.24 +0.1 1,796,909 - DVU1723 0.24 -0.1 1,796,909 - DVU1723 0.24 +2.0 1,796,916 + DVU1723 0.25 +0.8 1,796,924 - DVU1723 0.26 +0.2 1,796,926 + DVU1723 0.27 -0.5 1,797,023 - DVU1723 0.44 -1.1 1,797,105 + DVU1723 0.59 +0.0 1,797,153 + DVU1723 0.68 -0.4 1,797,200 - DVU1723 0.76 -0.1 1,797,225 + DVU1723 0.81 +0.6 1,797,232 + DVU1723 0.82 -0.1 1,797,233 - DVU1723 0.82 +0.6 1,797,453 - +0.5
Or see this region's nucleotide sequence