Experiment: m.b. Nalidixic 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_833 and HP15_834 are separated by 121 nucleotides HP15_834 and HP15_835 overlap by 7 nucleotides HP15_835 and HP15_836 are separated by 251 nucleotides
HP15_833: HP15_833 - 2,5-diketo-D-gluconic acid reductase B, at 851,577 to 852,386
_833
HP15_834: HP15_834 - glutathione-dependent formaldehyde-activating, GFA, at 852,508 to 852,921
_834
HP15_835: HP15_835 - secreted protein containing glucose sorbosone dehydrogenase domain, at 852,915 to 854,036
_835
HP15_836: HP15_836 - conserved hypothetical protein, at 854,288 to 855,109
_836
Position (kb) 852
853
854
855 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 851.915 kb on + strand, within HP15_833 at 852.033 kb on + strand, within HP15_833 at 852.051 kb on - strand, within HP15_833 at 852.115 kb on + strand, within HP15_833 at 852.115 kb on + strand, within HP15_833 at 852.115 kb on + strand, within HP15_833 at 852.115 kb on + strand, within HP15_833 at 852.123 kb on - strand, within HP15_833 at 852.123 kb on - strand, within HP15_833 at 852.215 kb on + strand, within HP15_833 at 852.277 kb on - strand, within HP15_833 at 852.292 kb on + strand, within HP15_833 at 852.478 kb on + strand at 852.478 kb on + strand at 852.486 kb on - strand at 852.498 kb on + strand at 852.498 kb on + strand at 852.602 kb on - strand, within HP15_834 at 852.653 kb on - strand, within HP15_834 at 852.659 kb on - strand, within HP15_834 at 852.752 kb on + strand, within HP15_834 at 853.034 kb on - strand, within HP15_835 at 853.141 kb on + strand, within HP15_835 at 853.149 kb on - strand, within HP15_835 at 853.220 kb on + strand, within HP15_835 at 853.238 kb on - strand, within HP15_835 at 853.323 kb on - strand, within HP15_835 at 853.336 kb on - strand, within HP15_835 at 853.503 kb on - strand, within HP15_835 at 853.503 kb on - strand, within HP15_835 at 853.537 kb on - strand, within HP15_835 at 853.605 kb on + strand, within HP15_835 at 853.640 kb on + strand, within HP15_835 at 853.658 kb on - strand, within HP15_835 at 853.685 kb on - strand, within HP15_835 at 853.798 kb on - strand, within HP15_835 at 853.919 kb on + strand, within HP15_835 at 854.019 kb on + strand at 854.020 kb on - strand at 854.131 kb on - strand at 854.142 kb on + strand at 854.276 kb on + strand at 854.326 kb on + strand at 854.439 kb on + strand, within HP15_836 at 854.467 kb on - strand, within HP15_836 at 854.524 kb on - strand, within HP15_836 at 854.524 kb on - strand, within HP15_836 at 854.573 kb on - strand, within HP15_836 at 854.590 kb on + strand, within HP15_836 at 854.608 kb on - strand, within HP15_836 at 854.644 kb on - strand, within HP15_836 at 854.646 kb on + strand, within HP15_836 at 854.894 kb on - strand, within HP15_836 at 855.027 kb on - strand at 855.029 kb on + strand at 855.029 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.032 mg/ml remove 851,915 + HP15_833 0.42 +0.9 852,033 + HP15_833 0.56 +0.2 852,051 - HP15_833 0.59 -2.4 852,115 + HP15_833 0.66 -0.5 852,115 + HP15_833 0.66 -3.8 852,115 + HP15_833 0.66 +0.0 852,115 + HP15_833 0.66 +0.4 852,123 - HP15_833 0.67 +0.1 852,123 - HP15_833 0.67 -0.2 852,215 + HP15_833 0.79 -0.2 852,277 - HP15_833 0.86 -0.8 852,292 + HP15_833 0.88 -0.5 852,478 + -0.1 852,478 + +0.5 852,486 - +0.3 852,498 + -0.1 852,498 + +0.3 852,602 - HP15_834 0.23 -0.1 852,653 - HP15_834 0.35 +1.0 852,659 - HP15_834 0.36 +0.3 852,752 + HP15_834 0.59 +0.4 853,034 - HP15_835 0.11 -0.8 853,141 + HP15_835 0.20 +0.4 853,149 - HP15_835 0.21 +0.8 853,220 + HP15_835 0.27 -0.5 853,238 - HP15_835 0.29 +0.3 853,323 - HP15_835 0.36 +0.8 853,336 - HP15_835 0.38 +0.2 853,503 - HP15_835 0.52 +0.7 853,503 - HP15_835 0.52 +0.5 853,537 - HP15_835 0.55 -0.2 853,605 + HP15_835 0.61 +0.9 853,640 + HP15_835 0.65 +0.2 853,658 - HP15_835 0.66 -0.3 853,685 - HP15_835 0.69 +0.9 853,798 - HP15_835 0.79 +0.6 853,919 + HP15_835 0.89 +0.1 854,019 + +0.6 854,020 - -0.0 854,131 - +0.1 854,142 + +0.3 854,276 + +0.7 854,326 + -0.3 854,439 + HP15_836 0.18 -0.3 854,467 - HP15_836 0.22 +0.6 854,524 - HP15_836 0.29 +0.1 854,524 - HP15_836 0.29 +0.5 854,573 - HP15_836 0.35 -0.0 854,590 + HP15_836 0.37 -0.2 854,608 - HP15_836 0.39 +1.6 854,644 - HP15_836 0.43 -0.3 854,646 + HP15_836 0.44 -0.9 854,894 - HP15_836 0.74 -0.1 855,027 - +1.9 855,029 + +0.2 855,029 + -1.4
Or see this region's nucleotide sequence