Experiment: m.b. Nalidixic 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_670 and HP15_671 overlap by 23 nucleotides HP15_671 and HP15_672 overlap by 8 nucleotides HP15_672 and HP15_673 are separated by 3 nucleotides
HP15_670: HP15_670 - peptidase U35, phage prohead, at 688,489 to 690,591
_670
HP15_671: HP15_671 - phage portal protein, lambda family, at 690,569 to 692,146
_671
HP15_672: HP15_672 - conserved hypothetical protein, at 692,139 to 692,681
_672
HP15_673: HP15_673 - phage terminase GpA, at 692,685 to 694,646
_673
Position (kb) 690
691
692
693 Strain fitness (log2 ratio) -1
0
1
2
3 at 689.651 kb on - strand, within HP15_670 at 689.731 kb on + strand, within HP15_670 at 689.768 kb on + strand, within HP15_670 at 689.776 kb on - strand, within HP15_670 at 689.831 kb on + strand, within HP15_670 at 689.846 kb on + strand, within HP15_670 at 689.854 kb on - strand, within HP15_670 at 690.048 kb on - strand, within HP15_670 at 690.054 kb on - strand, within HP15_670 at 690.147 kb on + strand, within HP15_670 at 690.147 kb on + strand, within HP15_670 at 690.147 kb on + strand, within HP15_670 at 690.155 kb on - strand, within HP15_670 at 690.170 kb on - strand, within HP15_670 at 690.175 kb on - strand, within HP15_670 at 690.230 kb on - strand, within HP15_670 at 690.313 kb on + strand, within HP15_670 at 690.364 kb on - strand, within HP15_670 at 690.533 kb on + strand at 690.652 kb on - strand at 690.734 kb on - strand, within HP15_671 at 690.754 kb on + strand, within HP15_671 at 690.820 kb on + strand, within HP15_671 at 690.921 kb on + strand, within HP15_671 at 690.921 kb on + strand, within HP15_671 at 690.929 kb on - strand, within HP15_671 at 690.931 kb on + strand, within HP15_671 at 690.961 kb on - strand, within HP15_671 at 691.026 kb on + strand, within HP15_671 at 691.080 kb on - strand, within HP15_671 at 691.085 kb on - strand, within HP15_671 at 691.203 kb on - strand, within HP15_671 at 691.210 kb on + strand, within HP15_671 at 691.226 kb on - strand, within HP15_671 at 691.253 kb on + strand, within HP15_671 at 691.254 kb on - strand, within HP15_671 at 691.358 kb on + strand, within HP15_671 at 691.374 kb on + strand, within HP15_671 at 691.413 kb on - strand, within HP15_671 at 691.624 kb on + strand, within HP15_671 at 691.827 kb on + strand, within HP15_671 at 691.827 kb on + strand, within HP15_671 at 691.827 kb on + strand, within HP15_671 at 691.891 kb on - strand, within HP15_671 at 691.972 kb on + strand, within HP15_671 at 692.019 kb on + strand at 692.019 kb on + strand at 692.027 kb on - strand at 692.027 kb on - strand at 692.092 kb on + strand at 692.150 kb on + strand at 692.157 kb on - strand at 692.204 kb on - strand, within HP15_672 at 692.284 kb on - strand, within HP15_672 at 692.301 kb on + strand, within HP15_672 at 692.309 kb on - strand, within HP15_672 at 692.503 kb on + strand, within HP15_672 at 692.503 kb on + strand, within HP15_672 at 692.506 kb on - strand, within HP15_672 at 692.540 kb on - strand, within HP15_672 at 692.540 kb on - strand, within HP15_672 at 692.595 kb on - strand, within HP15_672 at 692.848 kb on + strand at 692.856 kb on - strand at 692.856 kb on - strand at 692.856 kb on - strand at 692.970 kb on - strand, within HP15_673 at 693.044 kb on + strand, within HP15_673 at 693.052 kb on - strand, within HP15_673
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.032 mg/ml remove 689,651 - HP15_670 0.55 +0.3 689,731 + HP15_670 0.59 +0.1 689,768 + HP15_670 0.61 +0.2 689,776 - HP15_670 0.61 +0.3 689,831 + HP15_670 0.64 -0.2 689,846 + HP15_670 0.65 +0.7 689,854 - HP15_670 0.65 +0.5 690,048 - HP15_670 0.74 -0.5 690,054 - HP15_670 0.74 -0.2 690,147 + HP15_670 0.79 +0.6 690,147 + HP15_670 0.79 +1.6 690,147 + HP15_670 0.79 -0.3 690,155 - HP15_670 0.79 +1.2 690,170 - HP15_670 0.80 +1.6 690,175 - HP15_670 0.80 -1.2 690,230 - HP15_670 0.83 +0.1 690,313 + HP15_670 0.87 +0.3 690,364 - HP15_670 0.89 +0.5 690,533 + -0.2 690,652 - +0.6 690,734 - HP15_671 0.10 -1.5 690,754 + HP15_671 0.12 +0.2 690,820 + HP15_671 0.16 +0.8 690,921 + HP15_671 0.22 +2.3 690,921 + HP15_671 0.22 +0.7 690,929 - HP15_671 0.23 +0.2 690,931 + HP15_671 0.23 +0.2 690,961 - HP15_671 0.25 +1.2 691,026 + HP15_671 0.29 +0.5 691,080 - HP15_671 0.32 +0.8 691,085 - HP15_671 0.33 +0.4 691,203 - HP15_671 0.40 +0.5 691,210 + HP15_671 0.41 -0.5 691,226 - HP15_671 0.42 +0.6 691,253 + HP15_671 0.43 +0.5 691,254 - HP15_671 0.43 +0.1 691,358 + HP15_671 0.50 +3.2 691,374 + HP15_671 0.51 +1.3 691,413 - HP15_671 0.53 -0.5 691,624 + HP15_671 0.67 +0.9 691,827 + HP15_671 0.80 +0.9 691,827 + HP15_671 0.80 +1.1 691,827 + HP15_671 0.80 +1.7 691,891 - HP15_671 0.84 +0.9 691,972 + HP15_671 0.89 -1.1 692,019 + +0.3 692,019 + +0.0 692,027 - +1.8 692,027 - +0.5 692,092 + +0.1 692,150 + -0.1 692,157 - -0.6 692,204 - HP15_672 0.12 +0.2 692,284 - HP15_672 0.27 +0.2 692,301 + HP15_672 0.30 +0.8 692,309 - HP15_672 0.31 +0.4 692,503 + HP15_672 0.67 +0.1 692,503 + HP15_672 0.67 +0.3 692,506 - HP15_672 0.68 -0.1 692,540 - HP15_672 0.74 +1.6 692,540 - HP15_672 0.74 +0.7 692,595 - HP15_672 0.84 +1.0 692,848 + +0.8 692,856 - +0.9 692,856 - +0.2 692,856 - +0.4 692,970 - HP15_673 0.15 +0.5 693,044 + HP15_673 0.18 +0.9 693,052 - HP15_673 0.19 +1.4
Or see this region's nucleotide sequence