Experiment: m.b. Nalidixic 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3566 and HP15_3567 overlap by 15 nucleotides HP15_3567 and HP15_3568 are separated by 291 nucleotides HP15_3568 and HP15_3569 are separated by 191 nucleotides
HP15_3566: HP15_3566 - MATE efflux family protein, at 3,756,557 to 3,757,894
_3566
HP15_3567: HP15_3567 - conserved hypothetical protein, at 3,757,880 to 3,758,305
_3567
HP15_3568: HP15_3568 - beta-lactamase domain protein, at 3,758,597 to 3,760,234
_3568
HP15_3569: HP15_3569 - succinylglutamate desuccinylase/aspartoacylase, at 3,760,426 to 3,761,817
_3569
Position (kb)
3758
3759
3760
3761 Strain fitness (log2 ratio)
-1
0
1
2 at 3757.608 kb on + strand, within HP15_3566 at 3757.649 kb on - strand, within HP15_3566 at 3757.701 kb on + strand, within HP15_3566 at 3757.711 kb on - strand, within HP15_3566 at 3757.765 kb on + strand at 3757.792 kb on - strand at 3757.792 kb on - strand at 3758.047 kb on + strand, within HP15_3567 at 3758.231 kb on - strand, within HP15_3567 at 3758.231 kb on - strand, within HP15_3567 at 3758.300 kb on + strand at 3758.404 kb on + strand at 3758.412 kb on - strand at 3758.427 kb on - strand at 3758.476 kb on - strand at 3758.476 kb on - strand at 3758.594 kb on + strand at 3758.649 kb on + strand at 3758.697 kb on - strand at 3758.799 kb on - strand, within HP15_3568 at 3758.819 kb on + strand, within HP15_3568 at 3758.827 kb on - strand, within HP15_3568 at 3758.827 kb on - strand, within HP15_3568 at 3758.827 kb on - strand, within HP15_3568 at 3758.847 kb on + strand, within HP15_3568 at 3758.855 kb on - strand, within HP15_3568 at 3758.887 kb on + strand, within HP15_3568 at 3758.924 kb on + strand, within HP15_3568 at 3759.007 kb on + strand, within HP15_3568 at 3759.024 kb on + strand, within HP15_3568 at 3759.091 kb on - strand, within HP15_3568 at 3759.138 kb on - strand, within HP15_3568 at 3759.146 kb on + strand, within HP15_3568 at 3759.173 kb on + strand, within HP15_3568 at 3759.181 kb on - strand, within HP15_3568 at 3759.215 kb on - strand, within HP15_3568 at 3759.242 kb on - strand, within HP15_3568 at 3759.395 kb on - strand, within HP15_3568 at 3759.397 kb on + strand, within HP15_3568 at 3759.405 kb on - strand, within HP15_3568 at 3759.501 kb on - strand, within HP15_3568 at 3759.558 kb on - strand, within HP15_3568 at 3759.575 kb on - strand, within HP15_3568 at 3759.625 kb on - strand, within HP15_3568 at 3759.625 kb on - strand, within HP15_3568 at 3759.759 kb on - strand, within HP15_3568 at 3759.765 kb on - strand, within HP15_3568 at 3759.778 kb on - strand, within HP15_3568 at 3759.779 kb on + strand, within HP15_3568 at 3759.801 kb on + strand, within HP15_3568 at 3759.867 kb on - strand, within HP15_3568 at 3759.868 kb on + strand, within HP15_3568 at 3759.870 kb on + strand, within HP15_3568 at 3759.870 kb on + strand, within HP15_3568 at 3759.870 kb on + strand, within HP15_3568 at 3759.870 kb on + strand, within HP15_3568 at 3759.876 kb on - strand, within HP15_3568 at 3759.876 kb on - strand, within HP15_3568 at 3759.878 kb on - strand, within HP15_3568 at 3759.910 kb on + strand, within HP15_3568 at 3759.910 kb on + strand, within HP15_3568 at 3759.954 kb on - strand, within HP15_3568 at 3760.012 kb on + strand, within HP15_3568 at 3760.038 kb on + strand, within HP15_3568 at 3760.206 kb on + strand at 3760.305 kb on - strand at 3760.352 kb on - strand at 3760.386 kb on + strand at 3760.394 kb on - strand at 3760.440 kb on + strand at 3760.566 kb on + strand, within HP15_3569 at 3760.685 kb on + strand, within HP15_3569 at 3760.747 kb on + strand, within HP15_3569 at 3760.790 kb on + strand, within HP15_3569 at 3760.872 kb on - strand, within HP15_3569 at 3760.873 kb on - strand, within HP15_3569 at 3760.909 kb on + strand, within HP15_3569 at 3760.922 kb on - strand, within HP15_3569 at 3760.947 kb on + strand, within HP15_3569 at 3760.947 kb on + strand, within HP15_3569 at 3760.955 kb on - strand, within HP15_3569 at 3760.991 kb on + strand, within HP15_3569 at 3760.999 kb on - strand, within HP15_3569 at 3761.005 kb on - strand, within HP15_3569 at 3761.041 kb on + strand, within HP15_3569 at 3761.093 kb on - strand, within HP15_3569
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.032 mg/ml remove 3,757,608 + HP15_3566 0.79 -0.1 3,757,649 - HP15_3566 0.82 +0.3 3,757,701 + HP15_3566 0.86 +0.5 3,757,711 - HP15_3566 0.86 +0.3 3,757,765 + +0.5 3,757,792 - +0.4 3,757,792 - -1.3 3,758,047 + HP15_3567 0.39 +0.1 3,758,231 - HP15_3567 0.82 +0.6 3,758,231 - HP15_3567 0.82 -0.3 3,758,300 + -0.4 3,758,404 + -0.1 3,758,412 - +0.0 3,758,427 - -0.2 3,758,476 - +0.2 3,758,476 - +0.1 3,758,594 + +0.2 3,758,649 + -0.6 3,758,697 - -0.5 3,758,799 - HP15_3568 0.12 +0.1 3,758,819 + HP15_3568 0.14 -1.1 3,758,827 - HP15_3568 0.14 +0.1 3,758,827 - HP15_3568 0.14 -0.0 3,758,827 - HP15_3568 0.14 +0.3 3,758,847 + HP15_3568 0.15 +0.4 3,758,855 - HP15_3568 0.16 -0.5 3,758,887 + HP15_3568 0.18 +1.4 3,758,924 + HP15_3568 0.20 -0.1 3,759,007 + HP15_3568 0.25 +0.5 3,759,024 + HP15_3568 0.26 +0.8 3,759,091 - HP15_3568 0.30 +0.1 3,759,138 - HP15_3568 0.33 -0.9 3,759,146 + HP15_3568 0.34 +0.8 3,759,173 + HP15_3568 0.35 -0.7 3,759,181 - HP15_3568 0.36 +0.9 3,759,215 - HP15_3568 0.38 +0.3 3,759,242 - HP15_3568 0.39 -0.4 3,759,395 - HP15_3568 0.49 +0.2 3,759,397 + HP15_3568 0.49 +0.1 3,759,405 - HP15_3568 0.49 -0.3 3,759,501 - HP15_3568 0.55 -0.2 3,759,558 - HP15_3568 0.59 -0.1 3,759,575 - HP15_3568 0.60 +1.3 3,759,625 - HP15_3568 0.63 +0.5 3,759,625 - HP15_3568 0.63 +0.5 3,759,759 - HP15_3568 0.71 -0.2 3,759,765 - HP15_3568 0.71 -0.7 3,759,778 - HP15_3568 0.72 -0.1 3,759,779 + HP15_3568 0.72 +0.4 3,759,801 + HP15_3568 0.74 +0.4 3,759,867 - HP15_3568 0.78 +0.7 3,759,868 + HP15_3568 0.78 +0.4 3,759,870 + HP15_3568 0.78 +1.3 3,759,870 + HP15_3568 0.78 +0.1 3,759,870 + HP15_3568 0.78 -0.0 3,759,870 + HP15_3568 0.78 +2.4 3,759,876 - HP15_3568 0.78 +0.2 3,759,876 - HP15_3568 0.78 +0.1 3,759,878 - HP15_3568 0.78 +0.2 3,759,910 + HP15_3568 0.80 +0.2 3,759,910 + HP15_3568 0.80 -0.1 3,759,954 - HP15_3568 0.83 +0.1 3,760,012 + HP15_3568 0.86 +0.6 3,760,038 + HP15_3568 0.88 -0.1 3,760,206 + +0.8 3,760,305 - +0.4 3,760,352 - +0.9 3,760,386 + -0.6 3,760,394 - -0.7 3,760,440 + +0.5 3,760,566 + HP15_3569 0.10 +0.4 3,760,685 + HP15_3569 0.19 +0.2 3,760,747 + HP15_3569 0.23 -0.0 3,760,790 + HP15_3569 0.26 +0.3 3,760,872 - HP15_3569 0.32 -0.4 3,760,873 - HP15_3569 0.32 -0.5 3,760,909 + HP15_3569 0.35 +0.5 3,760,922 - HP15_3569 0.36 +0.4 3,760,947 + HP15_3569 0.37 +0.5 3,760,947 + HP15_3569 0.37 -0.2 3,760,955 - HP15_3569 0.38 +0.4 3,760,991 + HP15_3569 0.41 +0.7 3,760,999 - HP15_3569 0.41 +0.3 3,761,005 - HP15_3569 0.42 +0.5 3,761,041 + HP15_3569 0.44 +0.3 3,761,093 - HP15_3569 0.48 +0.2
Or see this region's nucleotide sequence