Strain Fitness in Marinobacter adhaerens HP15 around HP15_2671

Experiment: m.b. Nalidixic 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2669 and HP15_2670 are separated by 26 nucleotidesHP15_2670 and HP15_2671 are separated by 26 nucleotidesHP15_2671 and HP15_2672 are separated by 103 nucleotides HP15_2669: HP15_2669 - alpha/beta hydrolase fold protein, at 2,817,989 to 2,818,900 _2669 HP15_2670: HP15_2670 - RarD protein, DMT superfamily transporter, at 2,818,927 to 2,819,817 _2670 HP15_2671: HP15_2671 - permease of the drug/metabolite transporter (DMT) superfamily-like protein, at 2,819,844 to 2,820,731 _2671 HP15_2672: HP15_2672 - conserved hypothetical protein, at 2,820,835 to 2,823,030 _2672 Position (kb) 2819 2820 2821Strain fitness (log2 ratio) -2 -1 0 1 2at 2818.850 kb on + strandat 2818.867 kb on + strandat 2818.897 kb on - strandat 2818.902 kb on - strandat 2818.902 kb on - strandat 2818.904 kb on + strandat 2818.904 kb on + strandat 2818.912 kb on - strandat 2818.912 kb on - strandat 2818.978 kb on + strandat 2818.989 kb on + strandat 2819.063 kb on - strand, within HP15_2670at 2819.238 kb on + strand, within HP15_2670at 2819.276 kb on - strand, within HP15_2670at 2819.357 kb on - strand, within HP15_2670at 2819.488 kb on + strand, within HP15_2670at 2819.573 kb on + strand, within HP15_2670at 2819.578 kb on + strand, within HP15_2670at 2819.590 kb on + strand, within HP15_2670at 2819.590 kb on + strand, within HP15_2670at 2819.600 kb on + strand, within HP15_2670at 2819.668 kb on - strand, within HP15_2670at 2819.668 kb on - strand, within HP15_2670at 2819.729 kb on + strandat 2819.729 kb on + strandat 2819.729 kb on + strandat 2819.729 kb on + strandat 2819.729 kb on + strandat 2819.729 kb on + strandat 2819.737 kb on - strandat 2819.737 kb on - strandat 2819.792 kb on - strandat 2819.806 kb on - strandat 2819.917 kb on + strandat 2819.974 kb on + strand, within HP15_2671at 2819.974 kb on + strand, within HP15_2671at 2819.982 kb on - strand, within HP15_2671at 2820.081 kb on - strand, within HP15_2671at 2820.096 kb on + strand, within HP15_2671at 2820.096 kb on + strand, within HP15_2671at 2820.104 kb on - strand, within HP15_2671at 2820.104 kb on - strand, within HP15_2671at 2820.160 kb on + strand, within HP15_2671at 2820.180 kb on + strand, within HP15_2671at 2820.344 kb on + strand, within HP15_2671at 2820.352 kb on - strand, within HP15_2671at 2820.461 kb on - strand, within HP15_2671at 2820.489 kb on - strand, within HP15_2671at 2820.498 kb on + strand, within HP15_2671at 2820.538 kb on - strand, within HP15_2671at 2820.568 kb on + strand, within HP15_2671at 2820.576 kb on - strand, within HP15_2671at 2820.580 kb on + strand, within HP15_2671at 2820.580 kb on + strand, within HP15_2671at 2820.642 kb on + strand, within HP15_2671at 2820.650 kb on - strandat 2820.650 kb on - strandat 2820.650 kb on - strandat 2820.650 kb on - strandat 2820.676 kb on - strandat 2820.825 kb on + strandat 2820.833 kb on - strandat 2820.855 kb on + strandat 2821.014 kb on - strandat 2821.043 kb on + strandat 2821.063 kb on + strand, within HP15_2672at 2821.242 kb on - strand, within HP15_2672at 2821.249 kb on - strand, within HP15_2672at 2821.251 kb on + strand, within HP15_2672at 2821.280 kb on + strand, within HP15_2672at 2821.361 kb on + strand, within HP15_2672at 2821.385 kb on + strand, within HP15_2672at 2821.387 kb on - strand, within HP15_2672at 2821.413 kb on + strand, within HP15_2672at 2821.464 kb on + strand, within HP15_2672at 2821.473 kb on + strand, within HP15_2672at 2821.579 kb on - strand, within HP15_2672at 2821.630 kb on - strand, within HP15_2672at 2821.664 kb on + strand, within HP15_2672at 2821.664 kb on + strand, within HP15_2672at 2821.726 kb on - strand, within HP15_2672

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.032 mg/ml
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2,818,850 + -1.4
2,818,867 + +0.3
2,818,897 - +0.9
2,818,902 - -0.3
2,818,902 - -0.1
2,818,904 + +0.3
2,818,904 + +0.3
2,818,912 - +0.9
2,818,912 - +0.2
2,818,978 + +0.1
2,818,989 + -1.1
2,819,063 - HP15_2670 0.15 -0.4
2,819,238 + HP15_2670 0.35 +0.2
2,819,276 - HP15_2670 0.39 +0.7
2,819,357 - HP15_2670 0.48 -0.2
2,819,488 + HP15_2670 0.63 -0.3
2,819,573 + HP15_2670 0.73 -0.5
2,819,578 + HP15_2670 0.73 -0.0
2,819,590 + HP15_2670 0.74 +0.7
2,819,590 + HP15_2670 0.74 +0.7
2,819,600 + HP15_2670 0.76 +0.6
2,819,668 - HP15_2670 0.83 +1.2
2,819,668 - HP15_2670 0.83 +0.2
2,819,729 + +0.4
2,819,729 + +0.3
2,819,729 + -0.4
2,819,729 + +0.3
2,819,729 + +0.8
2,819,729 + -0.2
2,819,737 - -0.6
2,819,737 - -2.7
2,819,792 - +0.6
2,819,806 - +0.9
2,819,917 + +0.4
2,819,974 + HP15_2671 0.15 +0.5
2,819,974 + HP15_2671 0.15 +0.3
2,819,982 - HP15_2671 0.16 +0.3
2,820,081 - HP15_2671 0.27 +0.7
2,820,096 + HP15_2671 0.28 +0.2
2,820,096 + HP15_2671 0.28 +0.9
2,820,104 - HP15_2671 0.29 +0.3
2,820,104 - HP15_2671 0.29 +0.3
2,820,160 + HP15_2671 0.36 -0.1
2,820,180 + HP15_2671 0.38 +0.3
2,820,344 + HP15_2671 0.56 +0.1
2,820,352 - HP15_2671 0.57 +0.9
2,820,461 - HP15_2671 0.69 +0.3
2,820,489 - HP15_2671 0.73 +0.1
2,820,498 + HP15_2671 0.74 +1.0
2,820,538 - HP15_2671 0.78 +0.6
2,820,568 + HP15_2671 0.82 +0.9
2,820,576 - HP15_2671 0.82 -0.1
2,820,580 + HP15_2671 0.83 -0.3
2,820,580 + HP15_2671 0.83 +0.9
2,820,642 + HP15_2671 0.90 +0.3
2,820,650 - +0.8
2,820,650 - +0.2
2,820,650 - +0.5
2,820,650 - +1.9
2,820,676 - +0.5
2,820,825 + -0.4
2,820,833 - +0.3
2,820,855 + +0.9
2,821,014 - +1.2
2,821,043 + -0.2
2,821,063 + HP15_2672 0.10 -0.2
2,821,242 - HP15_2672 0.19 -0.0
2,821,249 - HP15_2672 0.19 +0.7
2,821,251 + HP15_2672 0.19 +0.3
2,821,280 + HP15_2672 0.20 +0.3
2,821,361 + HP15_2672 0.24 +0.0
2,821,385 + HP15_2672 0.25 -0.3
2,821,387 - HP15_2672 0.25 -0.2
2,821,413 + HP15_2672 0.26 +0.4
2,821,464 + HP15_2672 0.29 -0.0
2,821,473 + HP15_2672 0.29 +0.2
2,821,579 - HP15_2672 0.34 -0.2
2,821,630 - HP15_2672 0.36 +0.0
2,821,664 + HP15_2672 0.38 +0.6
2,821,664 + HP15_2672 0.38 +0.1
2,821,726 - HP15_2672 0.41 -1.2

Or see this region's nucleotide sequence