Experiment: m.b. Nalidixic 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2606 and HP15_2607 are separated by 2 nucleotides HP15_2607 and HP15_2608 are separated by 1 nucleotides HP15_2608 and HP15_2609 are separated by 10 nucleotides
HP15_2606: HP15_2606 - transporter, at 2,756,933 to 2,759,323
_2606
HP15_2607: HP15_2607 - BNR repeat glycosyl hydrolase-like protein, at 2,759,326 to 2,760,303
_2607
HP15_2608: HP15_2608 - hydroxymethylglutaryl-CoA lyase, at 2,760,305 to 2,761,228
_2608
HP15_2609: HP15_2609 - acyl-CoA transferase/carnitine dehydratase, at 2,761,239 to 2,762,435
_2609
Position (kb)
2760
2761
2762 Strain fitness (log2 ratio)
-1
0
1 at 2759.332 kb on - strand at 2759.414 kb on - strand at 2759.425 kb on + strand, within HP15_2607 at 2759.431 kb on - strand, within HP15_2607 at 2759.697 kb on + strand, within HP15_2607 at 2759.728 kb on - strand, within HP15_2607 at 2759.810 kb on - strand, within HP15_2607 at 2759.911 kb on - strand, within HP15_2607 at 2759.999 kb on + strand, within HP15_2607 at 2760.087 kb on + strand, within HP15_2607 at 2760.095 kb on - strand, within HP15_2607 at 2760.134 kb on + strand, within HP15_2607 at 2760.172 kb on + strand, within HP15_2607 at 2760.224 kb on - strand at 2760.245 kb on + strand at 2760.258 kb on - strand at 2760.324 kb on + strand at 2760.337 kb on - strand at 2760.454 kb on - strand, within HP15_2608 at 2760.482 kb on - strand, within HP15_2608 at 2760.662 kb on + strand, within HP15_2608 at 2760.670 kb on - strand, within HP15_2608 at 2760.670 kb on - strand, within HP15_2608 at 2760.677 kb on + strand, within HP15_2608 at 2760.737 kb on - strand, within HP15_2608 at 2760.742 kb on - strand, within HP15_2608 at 2760.837 kb on - strand, within HP15_2608 at 2760.882 kb on - strand, within HP15_2608 at 2760.894 kb on - strand, within HP15_2608 at 2760.952 kb on + strand, within HP15_2608 at 2760.998 kb on + strand, within HP15_2608 at 2761.003 kb on + strand, within HP15_2608 at 2761.006 kb on - strand, within HP15_2608 at 2761.011 kb on - strand, within HP15_2608 at 2761.192 kb on - strand at 2761.243 kb on + strand at 2761.266 kb on - strand at 2761.299 kb on + strand at 2761.342 kb on + strand at 2761.363 kb on + strand, within HP15_2609 at 2761.391 kb on + strand, within HP15_2609 at 2761.415 kb on + strand, within HP15_2609 at 2761.515 kb on - strand, within HP15_2609 at 2761.515 kb on - strand, within HP15_2609 at 2761.517 kb on + strand, within HP15_2609 at 2761.537 kb on - strand, within HP15_2609 at 2761.544 kb on - strand, within HP15_2609 at 2761.551 kb on - strand, within HP15_2609 at 2761.551 kb on - strand, within HP15_2609 at 2761.566 kb on - strand, within HP15_2609 at 2761.606 kb on + strand, within HP15_2609 at 2761.647 kb on - strand, within HP15_2609 at 2761.710 kb on + strand, within HP15_2609 at 2761.862 kb on - strand, within HP15_2609 at 2761.929 kb on + strand, within HP15_2609 at 2761.937 kb on - strand, within HP15_2609 at 2762.107 kb on + strand, within HP15_2609 at 2762.107 kb on + strand, within HP15_2609 at 2762.115 kb on - strand, within HP15_2609 at 2762.171 kb on + strand, within HP15_2609 at 2762.184 kb on + strand, within HP15_2609
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nalidixic 0.032 mg/ml remove 2,759,332 - -0.1 2,759,414 - +0.2 2,759,425 + HP15_2607 0.10 -0.0 2,759,431 - HP15_2607 0.11 +0.5 2,759,697 + HP15_2607 0.38 +0.1 2,759,728 - HP15_2607 0.41 +1.3 2,759,810 - HP15_2607 0.49 +1.2 2,759,911 - HP15_2607 0.60 +0.4 2,759,999 + HP15_2607 0.69 +0.1 2,760,087 + HP15_2607 0.78 -0.4 2,760,095 - HP15_2607 0.79 +1.6 2,760,134 + HP15_2607 0.83 -0.9 2,760,172 + HP15_2607 0.87 -0.1 2,760,224 - +0.3 2,760,245 + -0.1 2,760,258 - +1.1 2,760,324 + -0.2 2,760,337 - -0.6 2,760,454 - HP15_2608 0.16 +0.3 2,760,482 - HP15_2608 0.19 +0.8 2,760,662 + HP15_2608 0.39 +1.0 2,760,670 - HP15_2608 0.40 +1.6 2,760,670 - HP15_2608 0.40 +0.6 2,760,677 + HP15_2608 0.40 -0.2 2,760,737 - HP15_2608 0.47 -0.1 2,760,742 - HP15_2608 0.47 +0.9 2,760,837 - HP15_2608 0.58 -0.4 2,760,882 - HP15_2608 0.62 +0.1 2,760,894 - HP15_2608 0.64 -0.2 2,760,952 + HP15_2608 0.70 +1.0 2,760,998 + HP15_2608 0.75 +1.4 2,761,003 + HP15_2608 0.76 +1.2 2,761,006 - HP15_2608 0.76 -0.4 2,761,011 - HP15_2608 0.76 +0.3 2,761,192 - +0.4 2,761,243 + +0.3 2,761,266 - +0.2 2,761,299 + +0.1 2,761,342 + -0.2 2,761,363 + HP15_2609 0.10 +0.1 2,761,391 + HP15_2609 0.13 -0.2 2,761,415 + HP15_2609 0.15 +0.2 2,761,515 - HP15_2609 0.23 -0.1 2,761,515 - HP15_2609 0.23 -0.2 2,761,517 + HP15_2609 0.23 +0.3 2,761,537 - HP15_2609 0.25 -0.1 2,761,544 - HP15_2609 0.25 +0.8 2,761,551 - HP15_2609 0.26 -0.2 2,761,551 - HP15_2609 0.26 +1.4 2,761,566 - HP15_2609 0.27 +0.6 2,761,606 + HP15_2609 0.31 -0.8 2,761,647 - HP15_2609 0.34 +0.5 2,761,710 + HP15_2609 0.39 -0.1 2,761,862 - HP15_2609 0.52 +0.1 2,761,929 + HP15_2609 0.58 +0.6 2,761,937 - HP15_2609 0.58 +1.0 2,762,107 + HP15_2609 0.73 +0.1 2,762,107 + HP15_2609 0.73 -0.4 2,762,115 - HP15_2609 0.73 +0.0 2,762,171 + HP15_2609 0.78 -1.0 2,762,184 + HP15_2609 0.79 +0.4
Or see this region's nucleotide sequence