Experiment: 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03859 and CCNA_03860 are separated by 73 nucleotides CCNA_03860 and CCNA_03861 overlap by 4 nucleotides CCNA_03861 and CCNA_03862 are separated by 12 nucleotides CCNA_03862 and CCNA_03863 are separated by 6 nucleotides
CCNA_03859: CCNA_03859 - two-component response regulator cenR, at 4,022,266 to 4,022,952
_03859
CCNA_03860: CCNA_03860 - hypothetical protein, at 4,023,026 to 4,023,535
_03860
CCNA_03861: CCNA_03861 - pyridoxal 5'-phosphate dependent enzyme class III, at 4,023,532 to 4,024,185
_03861
CCNA_03862: CCNA_03862 - thiamine monophosphate synthase TenI, at 4,024,198 to 4,024,818
_03862
CCNA_03863: CCNA_03863 - hypothetical protein, at 4,024,825 to 4,025,235
_03863
Position (kb)
4023
4024
4025 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4022.560 kb on - strand, within CCNA_03859 at 4022.577 kb on + strand, within CCNA_03859 at 4022.585 kb on - strand, within CCNA_03859 at 4022.585 kb on - strand, within CCNA_03859 at 4022.595 kb on - strand, within CCNA_03859 at 4022.605 kb on - strand, within CCNA_03859 at 4022.608 kb on + strand, within CCNA_03859 at 4022.676 kb on - strand, within CCNA_03859 at 4022.768 kb on + strand, within CCNA_03859 at 4022.778 kb on + strand, within CCNA_03859 at 4022.831 kb on + strand, within CCNA_03859 at 4022.868 kb on + strand, within CCNA_03859 at 4022.887 kb on - strand at 4022.928 kb on + strand at 4022.962 kb on - strand at 4022.976 kb on - strand at 4022.978 kb on + strand at 4022.984 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.001 kb on + strand at 4023.008 kb on + strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.009 kb on - strand at 4023.089 kb on + strand at 4023.105 kb on - strand, within CCNA_03860 at 4023.105 kb on - strand, within CCNA_03860 at 4023.126 kb on - strand, within CCNA_03860 at 4023.138 kb on + strand, within CCNA_03860 at 4023.203 kb on + strand, within CCNA_03860 at 4023.215 kb on + strand, within CCNA_03860 at 4023.216 kb on + strand, within CCNA_03860 at 4023.223 kb on - strand, within CCNA_03860 at 4023.242 kb on + strand, within CCNA_03860 at 4023.261 kb on - strand, within CCNA_03860 at 4023.268 kb on - strand, within CCNA_03860 at 4023.330 kb on - strand, within CCNA_03860 at 4023.341 kb on + strand, within CCNA_03860 at 4023.341 kb on + strand, within CCNA_03860 at 4023.341 kb on + strand, within CCNA_03860 at 4023.349 kb on - strand, within CCNA_03860 at 4023.349 kb on - strand, within CCNA_03860 at 4023.349 kb on - strand, within CCNA_03860 at 4023.349 kb on - strand, within CCNA_03860 at 4023.356 kb on - strand, within CCNA_03860 at 4023.458 kb on + strand, within CCNA_03860 at 4023.461 kb on - strand, within CCNA_03860 at 4023.466 kb on - strand, within CCNA_03860 at 4023.483 kb on - strand, within CCNA_03860 at 4023.493 kb on - strand at 4023.581 kb on - strand at 4023.637 kb on + strand, within CCNA_03861 at 4023.679 kb on + strand, within CCNA_03861 at 4023.687 kb on - strand, within CCNA_03861 at 4023.823 kb on - strand, within CCNA_03861 at 4023.825 kb on + strand, within CCNA_03861 at 4023.827 kb on + strand, within CCNA_03861 at 4023.827 kb on + strand, within CCNA_03861 at 4023.827 kb on + strand, within CCNA_03861 at 4023.833 kb on - strand, within CCNA_03861 at 4023.956 kb on + strand, within CCNA_03861 at 4023.964 kb on - strand, within CCNA_03861 at 4023.972 kb on + strand, within CCNA_03861 at 4023.993 kb on + strand, within CCNA_03861 at 4024.042 kb on - strand, within CCNA_03861 at 4024.071 kb on + strand, within CCNA_03861 at 4024.085 kb on + strand, within CCNA_03861 at 4024.085 kb on + strand, within CCNA_03861 at 4024.085 kb on + strand, within CCNA_03861 at 4024.093 kb on - strand, within CCNA_03861 at 4024.135 kb on + strand at 4024.143 kb on - strand at 4024.195 kb on + strand at 4024.195 kb on + strand at 4024.195 kb on + strand at 4024.203 kb on - strand at 4024.203 kb on - strand at 4024.214 kb on + strand at 4024.244 kb on - strand at 4024.806 kb on - strand at 4024.978 kb on - strand, within CCNA_03863 at 4025.150 kb on + strand, within CCNA_03863 at 4025.150 kb on + strand, within CCNA_03863 at 4025.150 kb on + strand, within CCNA_03863 at 4025.158 kb on - strand, within CCNA_03863 at 4025.158 kb on - strand, within CCNA_03863 at 4025.158 kb on - strand, within CCNA_03863
Per-strain Table
Position Strand Gene LocusTag Fraction 48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G remove 4,022,560 - CCNA_03859 0.43 -1.6 4,022,577 + CCNA_03859 0.45 +2.5 4,022,585 - CCNA_03859 0.46 -2.5 4,022,585 - CCNA_03859 0.46 -2.6 4,022,595 - CCNA_03859 0.48 -2.1 4,022,605 - CCNA_03859 0.49 -1.4 4,022,608 + CCNA_03859 0.50 -0.5 4,022,676 - CCNA_03859 0.60 -1.3 4,022,768 + CCNA_03859 0.73 +0.2 4,022,778 + CCNA_03859 0.75 -2.2 4,022,831 + CCNA_03859 0.82 -1.0 4,022,868 + CCNA_03859 0.88 -1.6 4,022,887 - +2.1 4,022,928 + -0.9 4,022,962 - -0.2 4,022,976 - -1.0 4,022,978 + -0.1 4,022,984 + -1.0 4,023,001 + +0.6 4,023,001 + -0.5 4,023,001 + -1.8 4,023,001 + -0.4 4,023,001 + +0.4 4,023,001 + +0.2 4,023,008 + -0.3 4,023,009 - -0.1 4,023,009 - -0.0 4,023,009 - +1.4 4,023,009 - +0.0 4,023,009 - -0.0 4,023,009 - +0.3 4,023,089 + -0.6 4,023,105 - CCNA_03860 0.15 +0.7 4,023,105 - CCNA_03860 0.15 -1.3 4,023,126 - CCNA_03860 0.20 -1.8 4,023,138 + CCNA_03860 0.22 +0.3 4,023,203 + CCNA_03860 0.35 -0.7 4,023,215 + CCNA_03860 0.37 +0.5 4,023,216 + CCNA_03860 0.37 -1.7 4,023,223 - CCNA_03860 0.39 +0.0 4,023,242 + CCNA_03860 0.42 -0.6 4,023,261 - CCNA_03860 0.46 +1.0 4,023,268 - CCNA_03860 0.47 -0.4 4,023,330 - CCNA_03860 0.60 +0.2 4,023,341 + CCNA_03860 0.62 +0.3 4,023,341 + CCNA_03860 0.62 -0.7 4,023,341 + CCNA_03860 0.62 +0.5 4,023,349 - CCNA_03860 0.63 -0.3 4,023,349 - CCNA_03860 0.63 +0.2 4,023,349 - CCNA_03860 0.63 -1.0 4,023,349 - CCNA_03860 0.63 -0.2 4,023,356 - CCNA_03860 0.65 -0.1 4,023,458 + CCNA_03860 0.85 -0.5 4,023,461 - CCNA_03860 0.85 +1.0 4,023,466 - CCNA_03860 0.86 -0.3 4,023,483 - CCNA_03860 0.90 -0.3 4,023,493 - -1.1 4,023,581 - -1.7 4,023,637 + CCNA_03861 0.16 -1.8 4,023,679 + CCNA_03861 0.22 -2.3 4,023,687 - CCNA_03861 0.24 -2.0 4,023,823 - CCNA_03861 0.44 -2.6 4,023,825 + CCNA_03861 0.45 -1.0 4,023,827 + CCNA_03861 0.45 +1.0 4,023,827 + CCNA_03861 0.45 -3.1 4,023,827 + CCNA_03861 0.45 -3.6 4,023,833 - CCNA_03861 0.46 -1.5 4,023,956 + CCNA_03861 0.65 -2.6 4,023,964 - CCNA_03861 0.66 -0.0 4,023,972 + CCNA_03861 0.67 -1.7 4,023,993 + CCNA_03861 0.70 -1.6 4,024,042 - CCNA_03861 0.78 -0.6 4,024,071 + CCNA_03861 0.82 -1.0 4,024,085 + CCNA_03861 0.85 -2.2 4,024,085 + CCNA_03861 0.85 -0.2 4,024,085 + CCNA_03861 0.85 -2.9 4,024,093 - CCNA_03861 0.86 -1.0 4,024,135 + -0.9 4,024,143 - -2.7 4,024,195 + -0.7 4,024,195 + +0.2 4,024,195 + +0.5 4,024,203 - -0.8 4,024,203 - +0.5 4,024,214 + +0.2 4,024,244 - +1.9 4,024,806 - +0.2 4,024,978 - CCNA_03863 0.37 -0.7 4,025,150 + CCNA_03863 0.79 -0.6 4,025,150 + CCNA_03863 0.79 -1.5 4,025,150 + CCNA_03863 0.79 +0.2 4,025,158 - CCNA_03863 0.81 -0.7 4,025,158 - CCNA_03863 0.81 +0.2 4,025,158 - CCNA_03863 0.81 -0.4
Or see this region's nucleotide sequence