Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3058

Experiment: MoLS4 minimal media with L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3057 and DvMF_3058 are separated by 238 nucleotidesDvMF_3058 and DvMF_3059 are separated by 542 nucleotides DvMF_3057: DvMF_3057 - DEAD/DEAH box helicase domain protein (RefSeq), at 3,858,618 to 3,860,351 _3057 DvMF_3058: DvMF_3058 - putative nucleotide-binding protein (RefSeq), at 3,860,590 to 3,861,081 _3058 DvMF_3059: DvMF_3059 - hypothetical protein (RefSeq), at 3,861,624 to 3,862,022 _3059 Position (kb) 3860 3861 3862Strain fitness (log2 ratio) -1 0 1at 3859.599 kb on + strand, within DvMF_3057at 3859.679 kb on + strand, within DvMF_3057at 3859.724 kb on - strand, within DvMF_3057at 3860.149 kb on + strand, within DvMF_3057at 3860.263 kb on - strandat 3860.270 kb on + strandat 3860.629 kb on + strandat 3860.641 kb on + strand, within DvMF_3058at 3861.041 kb on + strandat 3861.226 kb on - strandat 3861.400 kb on - strandat 3861.468 kb on + strandat 3861.576 kb on + strandat 3862.027 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Serine
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3,859,599 + DvMF_3057 0.57 -0.2
3,859,679 + DvMF_3057 0.61 -0.5
3,859,724 - DvMF_3057 0.64 +0.1
3,860,149 + DvMF_3057 0.88 -0.1
3,860,263 - -0.6
3,860,270 + -0.3
3,860,629 + -0.2
3,860,641 + DvMF_3058 0.10 +0.6
3,861,041 + +1.0
3,861,226 - +0.1
3,861,400 - -0.1
3,861,468 + +0.4
3,861,576 + -1.6
3,862,027 - +0.4

Or see this region's nucleotide sequence