Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2726

Experiment: MoLS4 minimal media with L-Serine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2725 and DvMF_2726 are separated by 853 nucleotidesDvMF_2726 and DvMF_2727 are separated by 144 nucleotides DvMF_2725: DvMF_2725 - Resolvase domain protein (RefSeq), at 3,448,377 to 3,449,063 _2725 DvMF_2726: DvMF_2726 - ParB domain protein nuclease (RefSeq), at 3,449,917 to 3,450,681 _2726 DvMF_2727: DvMF_2727 - Recombinase (RefSeq), at 3,450,826 to 3,452,598 _2727 Position (kb) 3449 3450 3451Strain fitness (log2 ratio) -1 0 1 2at 3449.012 kb on + strandat 3449.192 kb on + strandat 3449.300 kb on - strandat 3449.406 kb on + strandat 3449.708 kb on - strandat 3449.748 kb on + strandat 3449.766 kb on + strandat 3449.811 kb on - strandat 3449.813 kb on + strandat 3449.815 kb on + strandat 3449.815 kb on + strandat 3449.823 kb on - strandat 3449.839 kb on + strandat 3449.839 kb on + strandat 3449.839 kb on + strandat 3449.839 kb on + strandat 3449.839 kb on + strandat 3449.839 kb on + strandat 3449.847 kb on - strandat 3449.894 kb on + strandat 3450.871 kb on - strandat 3451.321 kb on - strand, within DvMF_2727at 3451.396 kb on - strand, within DvMF_2727at 3451.396 kb on - strand, within DvMF_2727at 3451.586 kb on + strand, within DvMF_2727

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Serine
remove
3,449,012 + -0.7
3,449,192 + +0.2
3,449,300 - -0.6
3,449,406 + -0.5
3,449,708 - -0.1
3,449,748 + -0.3
3,449,766 + -0.6
3,449,811 - -0.7
3,449,813 + -0.9
3,449,815 + -0.5
3,449,815 + -0.4
3,449,823 - -1.3
3,449,839 + -0.4
3,449,839 + -0.5
3,449,839 + -0.6
3,449,839 + -0.6
3,449,839 + +2.1
3,449,839 + -0.4
3,449,847 - -0.5
3,449,894 + -0.1
3,450,871 - -0.7
3,451,321 - DvMF_2727 0.28 +0.4
3,451,396 - DvMF_2727 0.32 -0.3
3,451,396 - DvMF_2727 0.32 -0.5
3,451,586 + DvMF_2727 0.43 -0.8

Or see this region's nucleotide sequence