Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2319

Experiment: MoLS4 minimal media with L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2318 and DvMF_2319 are separated by 398 nucleotidesDvMF_2319 and DvMF_R0067 are separated by 206 nucleotidesDvMF_R0067 and DvMF_2320 are separated by 200 nucleotides DvMF_2318: DvMF_2318 - 5-formyltetrahydrofolate cyclo-ligase (RefSeq), at 2,917,092 to 2,917,796 _2318 DvMF_2319: DvMF_2319 - phosphoesterase, Icc protein-like protein (RefSeq), at 2,918,195 to 2,918,872 _2319 DvMF_R0067: DvMF_R0067 - tRNA-Met (RefSeq), at 2,919,079 to 2,919,155 _R0067 DvMF_2320: DvMF_2320 - 6-phosphogluconate dehydrogenase NAD-binding (RefSeq), at 2,919,356 to 2,920,219 _2320 Position (kb) 2918 2919Strain fitness (log2 ratio) -2 -1 0 1at 2917.301 kb on + strand, within DvMF_2318at 2917.375 kb on + strand, within DvMF_2318at 2917.390 kb on + strand, within DvMF_2318at 2917.749 kb on + strandat 2918.411 kb on - strand, within DvMF_2319at 2918.411 kb on - strand, within DvMF_2319at 2918.483 kb on - strand, within DvMF_2319at 2918.513 kb on - strand, within DvMF_2319at 2918.650 kb on + strand, within DvMF_2319at 2918.722 kb on + strand, within DvMF_2319at 2918.757 kb on + strand, within DvMF_2319at 2919.321 kb on - strandat 2919.332 kb on - strandat 2919.417 kb on - strandat 2919.418 kb on - strandat 2919.422 kb on + strandat 2919.783 kb on + strand, within DvMF_2320at 2919.798 kb on + strand, within DvMF_2320

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Serine
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2,917,301 + DvMF_2318 0.30 +1.0
2,917,375 + DvMF_2318 0.40 -0.6
2,917,390 + DvMF_2318 0.42 -0.2
2,917,749 + -0.6
2,918,411 - DvMF_2319 0.32 -1.7
2,918,411 - DvMF_2319 0.32 +0.3
2,918,483 - DvMF_2319 0.42 -1.7
2,918,513 - DvMF_2319 0.47 +0.2
2,918,650 + DvMF_2319 0.67 -1.9
2,918,722 + DvMF_2319 0.78 -0.5
2,918,757 + DvMF_2319 0.83 -0.5
2,919,321 - -0.6
2,919,332 - -0.7
2,919,417 - -0.2
2,919,418 - -0.2
2,919,422 + -0.5
2,919,783 + DvMF_2320 0.49 -0.5
2,919,798 + DvMF_2320 0.51 +0.6

Or see this region's nucleotide sequence