Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2129

Experiment: MoLS4 minimal media with L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_R0054 and DvMF_2129 are separated by 912 nucleotidesDvMF_2129 and DvMF_2130 are separated by 842 nucleotides DvMF_R0054: DvMF_R0054 - tRNA-Arg (RefSeq), at 2,648,707 to 2,648,783 _R0054 DvMF_2129: DvMF_2129 - L-lactate transport (RefSeq), at 2,649,696 to 2,651,351 _2129 DvMF_2130: DvMF_2130 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 2,652,194 to 2,652,811 _2130 Position (kb) 2649 2650 2651 2652Strain fitness (log2 ratio) -2 -1 0 1at 2649.149 kb on + strandat 2649.391 kb on - strandat 2649.658 kb on + strandat 2649.703 kb on + strandat 2649.749 kb on + strandat 2649.824 kb on + strandat 2650.253 kb on - strand, within DvMF_2129at 2650.437 kb on - strand, within DvMF_2129at 2650.568 kb on - strand, within DvMF_2129at 2650.575 kb on - strand, within DvMF_2129at 2650.651 kb on - strand, within DvMF_2129at 2650.864 kb on + strand, within DvMF_2129at 2650.887 kb on - strand, within DvMF_2129at 2650.918 kb on - strand, within DvMF_2129at 2650.920 kb on + strand, within DvMF_2129at 2650.941 kb on - strand, within DvMF_2129at 2650.989 kb on + strand, within DvMF_2129at 2651.093 kb on + strand, within DvMF_2129at 2651.115 kb on + strand, within DvMF_2129at 2651.407 kb on - strandat 2651.446 kb on + strandat 2651.454 kb on - strandat 2651.612 kb on - strandat 2651.612 kb on - strandat 2651.689 kb on + strandat 2651.922 kb on - strandat 2651.959 kb on + strandat 2652.142 kb on - strandat 2652.257 kb on - strand, within DvMF_2130at 2652.303 kb on + strand, within DvMF_2130at 2652.315 kb on + strand, within DvMF_2130at 2652.338 kb on - strand, within DvMF_2130

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Serine
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2,649,149 + -0.6
2,649,391 - -0.2
2,649,658 + -0.7
2,649,703 + -0.1
2,649,749 + -0.5
2,649,824 + -0.7
2,650,253 - DvMF_2129 0.34 -0.4
2,650,437 - DvMF_2129 0.45 -0.6
2,650,568 - DvMF_2129 0.53 -0.5
2,650,575 - DvMF_2129 0.53 -1.0
2,650,651 - DvMF_2129 0.58 -0.9
2,650,864 + DvMF_2129 0.71 -1.6
2,650,887 - DvMF_2129 0.72 -1.3
2,650,918 - DvMF_2129 0.74 +0.1
2,650,920 + DvMF_2129 0.74 +0.1
2,650,941 - DvMF_2129 0.75 -0.8
2,650,989 + DvMF_2129 0.78 -0.8
2,651,093 + DvMF_2129 0.84 -0.3
2,651,115 + DvMF_2129 0.86 -0.5
2,651,407 - -0.7
2,651,446 + -0.2
2,651,454 - -0.7
2,651,612 - -1.9
2,651,612 - +1.2
2,651,689 + -0.9
2,651,922 - -0.9
2,651,959 + -0.7
2,652,142 - -0.2
2,652,257 - DvMF_2130 0.10 -0.6
2,652,303 + DvMF_2130 0.18 -0.5
2,652,315 + DvMF_2130 0.20 -0.6
2,652,338 - DvMF_2130 0.23 -0.2

Or see this region's nucleotide sequence