Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1626

Experiment: MoLS4 minimal media with L-Serine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1625 and DvMF_1626 are separated by 269 nucleotidesDvMF_1626 and DvMF_1627 overlap by 4 nucleotides DvMF_1625: DvMF_1625 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,003,053 to 2,004,765 _1625 DvMF_1626: DvMF_1626 - Calcium-binding EF-hand-containing protein (RefSeq), at 2,005,035 to 2,005,523 _1626 DvMF_1627: DvMF_1627 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 2,005,520 to 2,007,136 _1627 Position (kb) 2005 2006Strain fitness (log2 ratio) -1 0 1at 2004.295 kb on - strand, within DvMF_1625at 2004.417 kb on - strand, within DvMF_1625at 2004.418 kb on - strand, within DvMF_1625at 2004.437 kb on + strand, within DvMF_1625at 2004.437 kb on + strand, within DvMF_1625at 2004.821 kb on + strandat 2004.903 kb on + strandat 2005.119 kb on + strand, within DvMF_1626at 2005.119 kb on + strand, within DvMF_1626at 2005.292 kb on + strand, within DvMF_1626at 2005.352 kb on + strand, within DvMF_1626at 2005.410 kb on - strand, within DvMF_1626at 2005.527 kb on - strandat 2005.532 kb on + strandat 2005.632 kb on + strandat 2005.637 kb on + strandat 2005.650 kb on - strandat 2005.685 kb on + strand, within DvMF_1627at 2005.695 kb on + strand, within DvMF_1627at 2005.836 kb on - strand, within DvMF_1627at 2005.903 kb on - strand, within DvMF_1627at 2005.966 kb on + strand, within DvMF_1627at 2006.038 kb on + strand, within DvMF_1627at 2006.480 kb on - strand, within DvMF_1627

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Serine
remove
2,004,295 - DvMF_1625 0.73 -0.8
2,004,417 - DvMF_1625 0.80 -0.5
2,004,418 - DvMF_1625 0.80 +0.4
2,004,437 + DvMF_1625 0.81 +0.0
2,004,437 + DvMF_1625 0.81 -0.3
2,004,821 + -0.6
2,004,903 + -0.6
2,005,119 + DvMF_1626 0.17 +1.5
2,005,119 + DvMF_1626 0.17 -0.5
2,005,292 + DvMF_1626 0.53 -0.4
2,005,352 + DvMF_1626 0.65 -0.0
2,005,410 - DvMF_1626 0.77 -0.5
2,005,527 - -0.1
2,005,532 + +0.8
2,005,632 + -0.1
2,005,637 + -0.1
2,005,650 - -0.4
2,005,685 + DvMF_1627 0.10 -0.5
2,005,695 + DvMF_1627 0.11 -0.9
2,005,836 - DvMF_1627 0.20 -0.3
2,005,903 - DvMF_1627 0.24 -1.0
2,005,966 + DvMF_1627 0.28 -0.5
2,006,038 + DvMF_1627 0.32 +0.1
2,006,480 - DvMF_1627 0.59 +0.5

Or see this region's nucleotide sequence