Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1432

Experiment: MoLS4 minimal media with L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1431 and DvMF_1432 are separated by 360 nucleotidesDvMF_1432 and DvMF_1433 are separated by 143 nucleotides DvMF_1431: DvMF_1431 - radical SAM enzyme, Cfr family (RefSeq), at 1,751,563 to 1,752,666 _1431 DvMF_1432: DvMF_1432 - hypothetical protein (RefSeq), at 1,753,027 to 1,754,031 _1432 DvMF_1433: DvMF_1433 - iron-containing alcohol dehydrogenase (RefSeq), at 1,754,175 to 1,755,470 _1433 Position (kb) 1753 1754 1755Strain fitness (log2 ratio) -3 -2 -1 0 1at 1752.474 kb on + strand, within DvMF_1431at 1752.482 kb on - strand, within DvMF_1431at 1752.482 kb on - strand, within DvMF_1431at 1752.487 kb on - strand, within DvMF_1431at 1752.509 kb on - strand, within DvMF_1431at 1752.634 kb on - strandat 1753.028 kb on - strandat 1753.474 kb on + strand, within DvMF_1432at 1753.490 kb on - strand, within DvMF_1432at 1753.629 kb on - strand, within DvMF_1432at 1753.699 kb on - strand, within DvMF_1432at 1753.871 kb on - strand, within DvMF_1432at 1753.917 kb on - strand, within DvMF_1432at 1754.038 kb on - strandat 1754.141 kb on - strandat 1754.232 kb on + strandat 1754.317 kb on + strand, within DvMF_1433at 1754.351 kb on + strand, within DvMF_1433at 1754.400 kb on - strand, within DvMF_1433at 1754.478 kb on - strand, within DvMF_1433at 1754.527 kb on - strand, within DvMF_1433at 1754.527 kb on - strand, within DvMF_1433at 1754.527 kb on - strand, within DvMF_1433at 1754.527 kb on - strand, within DvMF_1433at 1754.530 kb on + strand, within DvMF_1433at 1754.628 kb on - strand, within DvMF_1433at 1754.888 kb on - strand, within DvMF_1433

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Serine
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1,752,474 + DvMF_1431 0.83 -0.5
1,752,482 - DvMF_1431 0.83 -0.6
1,752,482 - DvMF_1431 0.83 -2.8
1,752,487 - DvMF_1431 0.84 -1.2
1,752,509 - DvMF_1431 0.86 -0.7
1,752,634 - +0.7
1,753,028 - -0.1
1,753,474 + DvMF_1432 0.44 -0.1
1,753,490 - DvMF_1432 0.46 -0.4
1,753,629 - DvMF_1432 0.60 +0.9
1,753,699 - DvMF_1432 0.67 -0.1
1,753,871 - DvMF_1432 0.84 +0.3
1,753,917 - DvMF_1432 0.89 -0.7
1,754,038 - -0.6
1,754,141 - -0.7
1,754,232 + -0.3
1,754,317 + DvMF_1433 0.11 -0.5
1,754,351 + DvMF_1433 0.14 -0.3
1,754,400 - DvMF_1433 0.17 -1.4
1,754,478 - DvMF_1433 0.23 -1.2
1,754,527 - DvMF_1433 0.27 +0.4
1,754,527 - DvMF_1433 0.27 -1.0
1,754,527 - DvMF_1433 0.27 -0.2
1,754,527 - DvMF_1433 0.27 -0.6
1,754,530 + DvMF_1433 0.27 -0.4
1,754,628 - DvMF_1433 0.35 -0.8
1,754,888 - DvMF_1433 0.55 -0.5

Or see this region's nucleotide sequence