Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0915

Experiment: MoLS4 minimal media with L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0914 and DvMF_0915 are separated by 2 nucleotidesDvMF_0915 and DvMF_0916 are separated by 89 nucleotidesDvMF_0916 and DvMF_0917 are separated by 263 nucleotides DvMF_0914: DvMF_0914 - ABC transporter related (RefSeq), at 1,099,755 to 1,100,543 _0914 DvMF_0915: DvMF_0915 - SufBD protein (RefSeq), at 1,100,546 to 1,101,712 _0915 DvMF_0916: DvMF_0916 - YCII-related (RefSeq), at 1,101,802 to 1,102,089 _0916 DvMF_0917: DvMF_0917 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 1,102,353 to 1,104,161 _0917 Position (kb) 1100 1101 1102Strain fitness (log2 ratio) -1 0 1at 1099.584 kb on - strandat 1099.691 kb on - strandat 1099.691 kb on - strandat 1101.744 kb on + strandat 1101.780 kb on - strandat 1101.979 kb on - strand, within DvMF_0916at 1102.030 kb on - strand, within DvMF_0916at 1102.082 kb on - strandat 1102.265 kb on + strandat 1102.481 kb on + strandat 1102.510 kb on - strandat 1102.550 kb on - strand, within DvMF_0917at 1102.649 kb on + strand, within DvMF_0917

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Serine
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1,099,584 - -1.3
1,099,691 - -0.9
1,099,691 - -0.7
1,101,744 + -0.0
1,101,780 - -0.3
1,101,979 - DvMF_0916 0.61 +0.6
1,102,030 - DvMF_0916 0.79 +0.1
1,102,082 - -0.2
1,102,265 + -0.1
1,102,481 + -0.4
1,102,510 - +0.0
1,102,550 - DvMF_0917 0.11 -0.8
1,102,649 + DvMF_0917 0.16 -0.5

Or see this region's nucleotide sequence