Experiment: MoLS4 minimal media with L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0636 and DvMF_0637 overlap by 4 nucleotides DvMF_0637 and DvMF_0638 are separated by 5 nucleotides DvMF_0638 and DvMF_0639 overlap by 4 nucleotides
DvMF_0636: DvMF_0636 - coenzyme F390 synthetase-like protein (RefSeq), at 759,237 to 760,457
_0636
DvMF_0637: DvMF_0637 - Radical SAM domain protein (RefSeq), at 760,454 to 762,220
_0637
DvMF_0638: DvMF_0638 - hypothetical protein (RefSeq), at 762,226 to 762,693
_0638
DvMF_0639: DvMF_0639 - Methyltransferase type 11 (RefSeq), at 762,690 to 763,613
_0639
Position (kb) 760
761
762
763 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 759.490 kb on - strand, within DvMF_0636 at 759.506 kb on + strand, within DvMF_0636 at 759.581 kb on + strand, within DvMF_0636 at 759.588 kb on + strand, within DvMF_0636 at 759.588 kb on + strand, within DvMF_0636 at 759.588 kb on + strand, within DvMF_0636 at 759.588 kb on + strand, within DvMF_0636 at 759.596 kb on - strand, within DvMF_0636 at 759.596 kb on - strand, within DvMF_0636 at 759.596 kb on - strand, within DvMF_0636 at 759.596 kb on - strand, within DvMF_0636 at 759.665 kb on + strand, within DvMF_0636 at 759.704 kb on - strand, within DvMF_0636 at 759.920 kb on + strand, within DvMF_0636 at 759.920 kb on + strand, within DvMF_0636 at 760.200 kb on - strand, within DvMF_0636 at 760.336 kb on + strand at 760.529 kb on + strand at 760.537 kb on - strand at 760.537 kb on - strand at 760.579 kb on - strand at 760.725 kb on + strand, within DvMF_0637 at 760.762 kb on - strand, within DvMF_0637 at 760.779 kb on - strand, within DvMF_0637 at 761.133 kb on + strand, within DvMF_0637 at 761.141 kb on - strand, within DvMF_0637 at 761.155 kb on - strand, within DvMF_0637 at 761.157 kb on + strand, within DvMF_0637 at 761.209 kb on + strand, within DvMF_0637 at 761.214 kb on - strand, within DvMF_0637 at 761.545 kb on - strand, within DvMF_0637 at 761.567 kb on + strand, within DvMF_0637 at 761.712 kb on - strand, within DvMF_0637 at 761.728 kb on - strand, within DvMF_0637 at 761.863 kb on + strand, within DvMF_0637 at 761.873 kb on - strand, within DvMF_0637 at 762.057 kb on - strand at 762.130 kb on - strand at 762.359 kb on + strand, within DvMF_0638 at 762.490 kb on - strand, within DvMF_0638 at 762.521 kb on + strand, within DvMF_0638 at 762.529 kb on - strand, within DvMF_0638 at 762.858 kb on + strand, within DvMF_0639 at 762.866 kb on - strand, within DvMF_0639 at 762.882 kb on + strand, within DvMF_0639 at 763.063 kb on + strand, within DvMF_0639 at 763.066 kb on - strand, within DvMF_0639 at 763.071 kb on - strand, within DvMF_0639 at 763.076 kb on - strand, within DvMF_0639 at 763.162 kb on + strand, within DvMF_0639
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 minimal media with L-Serine remove 759,490 - DvMF_0636 0.21 +0.7 759,506 + DvMF_0636 0.22 -0.3 759,581 + DvMF_0636 0.28 -0.3 759,588 + DvMF_0636 0.29 -3.3 759,588 + DvMF_0636 0.29 -0.4 759,588 + DvMF_0636 0.29 -1.4 759,588 + DvMF_0636 0.29 -0.8 759,596 - DvMF_0636 0.29 -0.4 759,596 - DvMF_0636 0.29 -0.8 759,596 - DvMF_0636 0.29 -3.2 759,596 - DvMF_0636 0.29 -0.8 759,665 + DvMF_0636 0.35 -0.3 759,704 - DvMF_0636 0.38 +0.1 759,920 + DvMF_0636 0.56 -1.4 759,920 + DvMF_0636 0.56 -0.6 760,200 - DvMF_0636 0.79 -0.0 760,336 + +0.3 760,529 + -0.1 760,537 - -0.6 760,537 - -0.6 760,579 - +0.4 760,725 + DvMF_0637 0.15 -0.5 760,762 - DvMF_0637 0.17 -0.7 760,779 - DvMF_0637 0.18 -0.7 761,133 + DvMF_0637 0.38 -0.5 761,141 - DvMF_0637 0.39 -0.5 761,155 - DvMF_0637 0.40 +0.2 761,157 + DvMF_0637 0.40 -0.4 761,209 + DvMF_0637 0.43 +0.1 761,214 - DvMF_0637 0.43 +0.5 761,545 - DvMF_0637 0.62 -0.7 761,567 + DvMF_0637 0.63 -0.6 761,712 - DvMF_0637 0.71 -0.3 761,728 - DvMF_0637 0.72 -0.5 761,863 + DvMF_0637 0.80 -0.7 761,873 - DvMF_0637 0.80 -0.5 762,057 - -0.9 762,130 - -0.2 762,359 + DvMF_0638 0.28 +0.2 762,490 - DvMF_0638 0.56 +1.7 762,521 + DvMF_0638 0.63 +0.1 762,529 - DvMF_0638 0.65 -0.8 762,858 + DvMF_0639 0.18 +0.4 762,866 - DvMF_0639 0.19 -0.5 762,882 + DvMF_0639 0.21 -0.5 763,063 + DvMF_0639 0.40 -0.4 763,066 - DvMF_0639 0.41 -2.8 763,071 - DvMF_0639 0.41 -0.1 763,076 - DvMF_0639 0.42 -0.4 763,162 + DvMF_0639 0.51 -0.8
Or see this region's nucleotide sequence