Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0301

Experiment: Pyruvate (fermenting) with L-Cysteine as sulfur source

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0299 and DVU0300 overlap by 119 nucleotidesDVU0300 and DVU0301 are separated by 165 nucleotidesDVU0301 and DVU0302 are separated by 219 nucleotides DVU0299: DVU0299 - anaerobic ribonucleoside-triphosphate reductase, putative (TIGR), at 345,642 to 347,687 DVU0299 DVU0300: DVU0300 - radical SAM domain protein (TIGR), at 347,569 to 348,306 DVU0300 DVU0301: DVU0301 - hypothetical protein (TIGR), at 348,472 to 348,621 DVU0301 DVU0302: DVU0302 - chemotaxis protein CheX, putative (TIGR), at 348,841 to 349,308 DVU0302 Position (kb) 348 349Strain fitness (log2 ratio) -2 -1 0 1 2at 347.486 kb on - strandat 347.499 kb on + strandat 347.514 kb on - strandat 347.696 kb on + strand, within DVU0300at 347.704 kb on - strand, within DVU0300at 348.440 kb on - strandat 348.575 kb on - strand, within DVU0301at 348.610 kb on + strandat 348.644 kb on - strandat 348.764 kb on + strandat 348.772 kb on + strandat 348.841 kb on - strandat 348.928 kb on + strand, within DVU0302at 348.956 kb on + strand, within DVU0302at 348.965 kb on - strand, within DVU0302at 348.973 kb on + strand, within DVU0302at 349.059 kb on - strand, within DVU0302at 349.213 kb on - strand, within DVU0302at 349.213 kb on - strand, within DVU0302at 349.235 kb on - strand, within DVU0302at 349.247 kb on - strand, within DVU0302at 349.306 kb on + strandat 349.365 kb on + strandat 349.369 kb on - strandat 349.373 kb on + strandat 349.373 kb on - strandat 349.403 kb on + strandat 349.411 kb on + strandat 349.419 kb on - strandat 349.426 kb on - strandat 349.436 kb on + strandat 349.463 kb on - strandat 349.480 kb on + strandat 349.500 kb on - strandat 349.579 kb on - strandat 349.579 kb on - strandat 349.605 kb on + strandat 349.618 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with L-Cysteine as sulfur source
remove
347,486 - +0.1
347,499 + +0.1
347,514 - -0.3
347,696 + DVU0300 0.17 +0.2
347,704 - DVU0300 0.18 -0.2
348,440 - -0.6
348,575 - DVU0301 0.69 -1.0
348,610 + -0.5
348,644 - +0.1
348,764 + -0.6
348,772 + +0.2
348,841 - +0.1
348,928 + DVU0302 0.19 -0.2
348,956 + DVU0302 0.25 -1.9
348,965 - DVU0302 0.26 +0.5
348,973 + DVU0302 0.28 +0.0
349,059 - DVU0302 0.47 +1.8
349,213 - DVU0302 0.79 -0.1
349,213 - DVU0302 0.79 -0.3
349,235 - DVU0302 0.84 -0.5
349,247 - DVU0302 0.87 -1.0
349,306 + +0.3
349,365 + +0.0
349,369 - -1.9
349,373 + +0.0
349,373 - -0.8
349,403 + -0.4
349,411 + -1.2
349,419 - -0.1
349,426 - +0.2
349,436 + +0.2
349,463 - -0.0
349,480 + +0.3
349,500 - -0.1
349,579 - -0.2
349,579 - -0.2
349,605 + -0.3
349,618 - +0.8

Or see this region's nucleotide sequence