Experiment: Pyruvate (fermenting) with L-Cysteine as sulfur source
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt livM and livG overlap by 4 nucleotides livG and livF are separated by 13 nucleotides livF and DVU0717 are separated by 218 nucleotides
DVU0714: livM - branched-chain amino acid ABC transporter, permease protein (TIGR), at 793,791 to 794,744
livM
DVU0715: livG - branched-chain amino acid ABC transporter, ATP binding protein (TIGR), at 794,741 to 795,508
livG
DVU0716: livF - branched-chain amino acid ABC transporter, ATP-binding protein (TIGR), at 795,522 to 796,238
livF
DVU0717: DVU0717 - GGDEF domain/EAL domain protein (TIGR), at 796,457 to 797,965
DVU0717
Position (kb) 795
796
797 Strain fitness (log2 ratio) -1
0
1
2 at 794.632 kb on + strand, within livM at 794.657 kb on - strand at 794.678 kb on - strand at 794.678 kb on - strand at 794.802 kb on - strand at 794.845 kb on - strand, within livG at 794.860 kb on + strand, within livG at 794.896 kb on + strand, within livG at 795.005 kb on - strand, within livG at 795.073 kb on + strand, within livG at 795.088 kb on + strand, within livG at 795.348 kb on - strand, within livG at 795.348 kb on - strand, within livG at 795.457 kb on - strand at 795.524 kb on - strand at 795.647 kb on - strand, within livF at 795.733 kb on + strand, within livF at 795.733 kb on + strand, within livF at 795.764 kb on + strand, within livF at 795.897 kb on + strand, within livF at 795.979 kb on + strand, within livF at 796.068 kb on - strand, within livF at 796.078 kb on + strand, within livF at 796.122 kb on - strand, within livF at 796.285 kb on + strand at 796.293 kb on + strand at 796.361 kb on - strand at 796.415 kb on - strand at 796.463 kb on + strand at 796.463 kb on + strand at 796.463 kb on + strand at 796.471 kb on - strand at 796.550 kb on + strand at 796.556 kb on + strand at 796.581 kb on + strand at 796.672 kb on - strand, within DVU0717 at 796.748 kb on + strand, within DVU0717 at 796.865 kb on - strand, within DVU0717 at 797.020 kb on - strand, within DVU0717 at 797.053 kb on - strand, within DVU0717 at 797.128 kb on + strand, within DVU0717
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate (fermenting) with L-Cysteine as sulfur source remove 794,632 + livM DVU0714 0.88 +0.7 794,657 - +0.9 794,678 - +0.5 794,678 - +0.2 794,802 - +0.6 794,845 - livG DVU0715 0.14 +2.2 794,860 + livG DVU0715 0.15 +1.3 794,896 + livG DVU0715 0.20 -0.2 795,005 - livG DVU0715 0.34 +0.2 795,073 + livG DVU0715 0.43 +0.5 795,088 + livG DVU0715 0.45 +0.5 795,348 - livG DVU0715 0.79 +0.3 795,348 - livG DVU0715 0.79 -0.2 795,457 - +0.5 795,524 - +0.2 795,647 - livF DVU0716 0.17 +0.8 795,733 + livF DVU0716 0.29 +0.5 795,733 + livF DVU0716 0.29 +0.7 795,764 + livF DVU0716 0.34 -0.4 795,897 + livF DVU0716 0.52 +0.6 795,979 + livF DVU0716 0.64 +0.6 796,068 - livF DVU0716 0.76 +0.4 796,078 + livF DVU0716 0.78 +0.7 796,122 - livF DVU0716 0.84 +0.7 796,285 + +0.1 796,293 + -0.3 796,361 - +0.1 796,415 - -1.4 796,463 + -0.2 796,463 + -0.5 796,463 + -0.1 796,471 - -0.2 796,550 + -0.3 796,556 + -0.7 796,581 + -0.6 796,672 - DVU0717 0.14 -0.2 796,748 + DVU0717 0.19 +0.4 796,865 - DVU0717 0.27 +0.1 797,020 - DVU0717 0.37 +0.9 797,053 - DVU0717 0.39 +0.5 797,128 + DVU0717 0.44 -0.0
Or see this region's nucleotide sequence