Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02700

Experiment: 24 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02699 and CCNA_02700 overlap by 14 nucleotidesCCNA_02700 and CCNA_02701 are separated by 117 nucleotides CCNA_02699: CCNA_02699 - guanine deaminase, at 2,852,575 to 2,853,861 _02699 CCNA_02700: CCNA_02700 - xanthine dehydrogenase accessory protein XdhC, at 2,853,848 to 2,854,864 _02700 CCNA_02701: CCNA_02701 - xanthine dehydrogenase large subunit, at 2,854,982 to 2,857,321 _02701 Position (kb) 2853 2854 2855Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2853.011 kb on + strand, within CCNA_02699at 2853.340 kb on + strand, within CCNA_02699at 2853.590 kb on - strand, within CCNA_02699at 2853.953 kb on + strand, within CCNA_02700at 2853.953 kb on - strand, within CCNA_02700at 2853.980 kb on + strand, within CCNA_02700at 2853.980 kb on + strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.988 kb on - strand, within CCNA_02700at 2853.989 kb on + strand, within CCNA_02700at 2854.052 kb on - strand, within CCNA_02700at 2854.113 kb on + strand, within CCNA_02700at 2854.113 kb on + strand, within CCNA_02700at 2854.114 kb on - strand, within CCNA_02700at 2854.118 kb on + strand, within CCNA_02700at 2854.121 kb on - strand, within CCNA_02700at 2854.121 kb on - strand, within CCNA_02700at 2854.136 kb on + strand, within CCNA_02700at 2854.137 kb on + strand, within CCNA_02700at 2854.141 kb on + strand, within CCNA_02700at 2854.144 kb on - strand, within CCNA_02700at 2854.144 kb on - strand, within CCNA_02700at 2854.147 kb on + strand, within CCNA_02700at 2854.147 kb on + strand, within CCNA_02700at 2854.147 kb on + strand, within CCNA_02700at 2854.147 kb on + strand, within CCNA_02700at 2854.147 kb on + strand, within CCNA_02700at 2854.149 kb on - strand, within CCNA_02700at 2854.149 kb on - strand, within CCNA_02700at 2854.155 kb on - strand, within CCNA_02700at 2854.155 kb on - strand, within CCNA_02700at 2854.155 kb on - strand, within CCNA_02700at 2854.155 kb on - strand, within CCNA_02700at 2854.162 kb on + strand, within CCNA_02700at 2854.228 kb on - strand, within CCNA_02700at 2854.275 kb on - strand, within CCNA_02700at 2854.420 kb on + strand, within CCNA_02700at 2854.442 kb on - strand, within CCNA_02700at 2854.453 kb on + strand, within CCNA_02700at 2854.453 kb on + strand, within CCNA_02700at 2854.474 kb on + strand, within CCNA_02700at 2854.505 kb on + strand, within CCNA_02700at 2854.515 kb on - strand, within CCNA_02700at 2854.532 kb on - strand, within CCNA_02700at 2854.541 kb on - strand, within CCNA_02700at 2854.581 kb on - strand, within CCNA_02700at 2854.596 kb on + strand, within CCNA_02700at 2854.604 kb on - strand, within CCNA_02700at 2854.604 kb on - strand, within CCNA_02700at 2854.604 kb on - strand, within CCNA_02700at 2854.604 kb on - strand, within CCNA_02700at 2854.604 kb on - strand, within CCNA_02700at 2854.608 kb on + strand, within CCNA_02700at 2854.626 kb on + strand, within CCNA_02700at 2854.639 kb on - strand, within CCNA_02700at 2854.679 kb on - strand, within CCNA_02700at 2854.755 kb on + strand, within CCNA_02700at 2854.758 kb on - strand, within CCNA_02700at 2854.799 kb on + strandat 2854.842 kb on + strandat 2854.850 kb on - strandat 2854.874 kb on + strandat 2854.874 kb on + strandat 2854.874 kb on + strandat 2854.874 kb on + strandat 2854.874 kb on + strandat 2854.874 kb on + strandat 2854.874 kb on + strandat 2854.874 kb on + strandat 2854.882 kb on - strandat 2854.882 kb on - strandat 2854.882 kb on - strandat 2854.882 kb on - strandat 2854.882 kb on - strandat 2854.882 kb on - strandat 2854.887 kb on + strandat 2854.887 kb on + strandat 2854.895 kb on - strandat 2854.895 kb on - strandat 2854.895 kb on - strandat 2854.895 kb on - strandat 2854.895 kb on - strandat 2854.895 kb on - strandat 2854.895 kb on - strandat 2854.901 kb on - strandat 2854.979 kb on + strandat 2854.985 kb on - strandat 2854.987 kb on - strandat 2855.000 kb on + strandat 2855.040 kb on - strandat 2855.068 kb on - strandat 2855.075 kb on - strandat 2855.087 kb on + strandat 2855.092 kb on + strandat 2855.151 kb on + strandat 2855.151 kb on + strandat 2855.151 kb on + strandat 2855.159 kb on - strandat 2855.159 kb on - strandat 2855.206 kb on + strandat 2855.214 kb on - strandat 2855.251 kb on - strand, within CCNA_02701at 2855.278 kb on - strand, within CCNA_02701at 2855.307 kb on - strand, within CCNA_02701at 2855.343 kb on + strand, within CCNA_02701at 2855.354 kb on + strand, within CCNA_02701at 2855.356 kb on - strand, within CCNA_02701at 2855.359 kb on + strand, within CCNA_02701at 2855.361 kb on + strand, within CCNA_02701at 2855.361 kb on - strand, within CCNA_02701at 2855.373 kb on - strand, within CCNA_02701at 2855.381 kb on - strand, within CCNA_02701at 2855.409 kb on + strand, within CCNA_02701at 2855.409 kb on + strand, within CCNA_02701at 2855.417 kb on - strand, within CCNA_02701at 2855.438 kb on - strand, within CCNA_02701at 2855.443 kb on - strand, within CCNA_02701at 2855.443 kb on - strand, within CCNA_02701at 2855.447 kb on + strand, within CCNA_02701at 2855.451 kb on - strand, within CCNA_02701at 2855.521 kb on - strand, within CCNA_02701at 2855.557 kb on + strand, within CCNA_02701at 2855.570 kb on - strand, within CCNA_02701at 2855.596 kb on + strand, within CCNA_02701at 2855.650 kb on - strand, within CCNA_02701at 2855.650 kb on - strand, within CCNA_02701at 2855.666 kb on - strand, within CCNA_02701at 2855.714 kb on - strand, within CCNA_02701at 2855.726 kb on + strand, within CCNA_02701at 2855.726 kb on + strand, within CCNA_02701at 2855.734 kb on - strand, within CCNA_02701at 2855.734 kb on - strand, within CCNA_02701at 2855.752 kb on + strand, within CCNA_02701at 2855.765 kb on + strand, within CCNA_02701at 2855.771 kb on - strand, within CCNA_02701at 2855.773 kb on - strand, within CCNA_02701at 2855.773 kb on - strand, within CCNA_02701at 2855.796 kb on + strand, within CCNA_02701at 2855.796 kb on + strand, within CCNA_02701at 2855.804 kb on - strand, within CCNA_02701at 2855.811 kb on + strand, within CCNA_02701at 2855.819 kb on - strand, within CCNA_02701

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Per-strain Table

Position Strand Gene LocusTag Fraction 24 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
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2,853,011 + CCNA_02699 0.34 +1.4
2,853,340 + CCNA_02699 0.59 +0.8
2,853,590 - CCNA_02699 0.79 +0.1
2,853,953 + CCNA_02700 0.10 +1.2
2,853,953 - CCNA_02700 0.10 +0.3
2,853,980 + CCNA_02700 0.13 -0.0
2,853,980 + CCNA_02700 0.13 -1.3
2,853,988 - CCNA_02700 0.14 +0.4
2,853,988 - CCNA_02700 0.14 +0.6
2,853,988 - CCNA_02700 0.14 +1.3
2,853,988 - CCNA_02700 0.14 +0.6
2,853,988 - CCNA_02700 0.14 +0.2
2,853,988 - CCNA_02700 0.14 +0.4
2,853,988 - CCNA_02700 0.14 +0.5
2,853,988 - CCNA_02700 0.14 +0.3
2,853,988 - CCNA_02700 0.14 +1.3
2,853,989 + CCNA_02700 0.14 +0.8
2,854,052 - CCNA_02700 0.20 +0.2
2,854,113 + CCNA_02700 0.26 -0.3
2,854,113 + CCNA_02700 0.26 +0.8
2,854,114 - CCNA_02700 0.26 +0.5
2,854,118 + CCNA_02700 0.27 -0.4
2,854,121 - CCNA_02700 0.27 +1.1
2,854,121 - CCNA_02700 0.27 +0.3
2,854,136 + CCNA_02700 0.28 +0.2
2,854,137 + CCNA_02700 0.28 +1.0
2,854,141 + CCNA_02700 0.29 +0.4
2,854,144 - CCNA_02700 0.29 +1.2
2,854,144 - CCNA_02700 0.29 +0.5
2,854,147 + CCNA_02700 0.29 -0.4
2,854,147 + CCNA_02700 0.29 +0.2
2,854,147 + CCNA_02700 0.29 +1.0
2,854,147 + CCNA_02700 0.29 +0.2
2,854,147 + CCNA_02700 0.29 +0.8
2,854,149 - CCNA_02700 0.30 +0.0
2,854,149 - CCNA_02700 0.30 +0.2
2,854,155 - CCNA_02700 0.30 -0.3
2,854,155 - CCNA_02700 0.30 +0.3
2,854,155 - CCNA_02700 0.30 +0.8
2,854,155 - CCNA_02700 0.30 +0.2
2,854,162 + CCNA_02700 0.31 -0.2
2,854,228 - CCNA_02700 0.37 +0.1
2,854,275 - CCNA_02700 0.42 +0.3
2,854,420 + CCNA_02700 0.56 +0.9
2,854,442 - CCNA_02700 0.58 +0.1
2,854,453 + CCNA_02700 0.59 -2.0
2,854,453 + CCNA_02700 0.59 +0.8
2,854,474 + CCNA_02700 0.62 -0.5
2,854,505 + CCNA_02700 0.65 -0.8
2,854,515 - CCNA_02700 0.66 +0.5
2,854,532 - CCNA_02700 0.67 +0.0
2,854,541 - CCNA_02700 0.68 +0.3
2,854,581 - CCNA_02700 0.72 +0.1
2,854,596 + CCNA_02700 0.74 +0.2
2,854,604 - CCNA_02700 0.74 -0.2
2,854,604 - CCNA_02700 0.74 -0.2
2,854,604 - CCNA_02700 0.74 +0.3
2,854,604 - CCNA_02700 0.74 -0.7
2,854,604 - CCNA_02700 0.74 +0.8
2,854,608 + CCNA_02700 0.75 +0.0
2,854,626 + CCNA_02700 0.76 -0.3
2,854,639 - CCNA_02700 0.78 +0.3
2,854,679 - CCNA_02700 0.82 +0.7
2,854,755 + CCNA_02700 0.89 +0.7
2,854,758 - CCNA_02700 0.89 -0.6
2,854,799 + -0.3
2,854,842 + +0.8
2,854,850 - +0.5
2,854,874 + -0.3
2,854,874 + +0.7
2,854,874 + +0.0
2,854,874 + +0.8
2,854,874 + +0.5
2,854,874 + +0.3
2,854,874 + -0.5
2,854,874 + +0.4
2,854,882 - +0.5
2,854,882 - -0.6
2,854,882 - -0.0
2,854,882 - +1.0
2,854,882 - +0.5
2,854,882 - +0.1
2,854,887 + +1.3
2,854,887 + +0.9
2,854,895 - -0.0
2,854,895 - +0.3
2,854,895 - +0.4
2,854,895 - +1.2
2,854,895 - +0.7
2,854,895 - -1.0
2,854,895 - +0.2
2,854,901 - +1.0
2,854,979 + +0.9
2,854,985 - +0.3
2,854,987 - +0.3
2,855,000 + +1.2
2,855,040 - +0.5
2,855,068 - +0.7
2,855,075 - +0.1
2,855,087 + +0.1
2,855,092 + +0.3
2,855,151 + -0.2
2,855,151 + -0.4
2,855,151 + -1.9
2,855,159 - +1.0
2,855,159 - +3.4
2,855,206 + -0.2
2,855,214 - +0.2
2,855,251 - CCNA_02701 0.11 +0.1
2,855,278 - CCNA_02701 0.13 -0.2
2,855,307 - CCNA_02701 0.14 +0.1
2,855,343 + CCNA_02701 0.15 -1.0
2,855,354 + CCNA_02701 0.16 +0.1
2,855,356 - CCNA_02701 0.16 +0.5
2,855,359 + CCNA_02701 0.16 +0.4
2,855,361 + CCNA_02701 0.16 -0.4
2,855,361 - CCNA_02701 0.16 +0.7
2,855,373 - CCNA_02701 0.17 -0.0
2,855,381 - CCNA_02701 0.17 +0.7
2,855,409 + CCNA_02701 0.18 +0.4
2,855,409 + CCNA_02701 0.18 -0.1
2,855,417 - CCNA_02701 0.19 +0.2
2,855,438 - CCNA_02701 0.19 +0.1
2,855,443 - CCNA_02701 0.20 +0.5
2,855,443 - CCNA_02701 0.20 +0.2
2,855,447 + CCNA_02701 0.20 -1.2
2,855,451 - CCNA_02701 0.20 +1.0
2,855,521 - CCNA_02701 0.23 +0.4
2,855,557 + CCNA_02701 0.25 +0.7
2,855,570 - CCNA_02701 0.25 +0.3
2,855,596 + CCNA_02701 0.26 +0.6
2,855,650 - CCNA_02701 0.29 +1.8
2,855,650 - CCNA_02701 0.29 +1.2
2,855,666 - CCNA_02701 0.29 +0.4
2,855,714 - CCNA_02701 0.31 +0.6
2,855,726 + CCNA_02701 0.32 +0.3
2,855,726 + CCNA_02701 0.32 +0.9
2,855,734 - CCNA_02701 0.32 +0.7
2,855,734 - CCNA_02701 0.32 +0.3
2,855,752 + CCNA_02701 0.33 -1.6
2,855,765 + CCNA_02701 0.33 -1.7
2,855,771 - CCNA_02701 0.34 +0.4
2,855,773 - CCNA_02701 0.34 +0.5
2,855,773 - CCNA_02701 0.34 +0.7
2,855,796 + CCNA_02701 0.35 +0.2
2,855,796 + CCNA_02701 0.35 +0.6
2,855,804 - CCNA_02701 0.35 +1.5
2,855,811 + CCNA_02701 0.35 -0.9
2,855,819 - CCNA_02701 0.36 +0.5

Or see this region's nucleotide sequence