Experiment: 24 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02699 and CCNA_02700 overlap by 14 nucleotides CCNA_02700 and CCNA_02701 are separated by 117 nucleotides
CCNA_02699: CCNA_02699 - guanine deaminase, at 2,852,575 to 2,853,861
_02699
CCNA_02700: CCNA_02700 - xanthine dehydrogenase accessory protein XdhC, at 2,853,848 to 2,854,864
_02700
CCNA_02701: CCNA_02701 - xanthine dehydrogenase large subunit, at 2,854,982 to 2,857,321
_02701
Position (kb)
2853
2854
2855 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2853.011 kb on + strand, within CCNA_02699 at 2853.340 kb on + strand, within CCNA_02699 at 2853.590 kb on - strand, within CCNA_02699 at 2853.953 kb on + strand, within CCNA_02700 at 2853.953 kb on - strand, within CCNA_02700 at 2853.980 kb on + strand, within CCNA_02700 at 2853.980 kb on + strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.988 kb on - strand, within CCNA_02700 at 2853.989 kb on + strand, within CCNA_02700 at 2854.052 kb on - strand, within CCNA_02700 at 2854.113 kb on + strand, within CCNA_02700 at 2854.113 kb on + strand, within CCNA_02700 at 2854.114 kb on - strand, within CCNA_02700 at 2854.118 kb on + strand, within CCNA_02700 at 2854.121 kb on - strand, within CCNA_02700 at 2854.121 kb on - strand, within CCNA_02700 at 2854.136 kb on + strand, within CCNA_02700 at 2854.137 kb on + strand, within CCNA_02700 at 2854.141 kb on + strand, within CCNA_02700 at 2854.144 kb on - strand, within CCNA_02700 at 2854.144 kb on - strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.147 kb on + strand, within CCNA_02700 at 2854.149 kb on - strand, within CCNA_02700 at 2854.149 kb on - strand, within CCNA_02700 at 2854.155 kb on - strand, within CCNA_02700 at 2854.155 kb on - strand, within CCNA_02700 at 2854.155 kb on - strand, within CCNA_02700 at 2854.155 kb on - strand, within CCNA_02700 at 2854.162 kb on + strand, within CCNA_02700 at 2854.228 kb on - strand, within CCNA_02700 at 2854.275 kb on - strand, within CCNA_02700 at 2854.420 kb on + strand, within CCNA_02700 at 2854.442 kb on - strand, within CCNA_02700 at 2854.453 kb on + strand, within CCNA_02700 at 2854.453 kb on + strand, within CCNA_02700 at 2854.474 kb on + strand, within CCNA_02700 at 2854.505 kb on + strand, within CCNA_02700 at 2854.515 kb on - strand, within CCNA_02700 at 2854.532 kb on - strand, within CCNA_02700 at 2854.541 kb on - strand, within CCNA_02700 at 2854.581 kb on - strand, within CCNA_02700 at 2854.596 kb on + strand, within CCNA_02700 at 2854.604 kb on - strand, within CCNA_02700 at 2854.604 kb on - strand, within CCNA_02700 at 2854.604 kb on - strand, within CCNA_02700 at 2854.604 kb on - strand, within CCNA_02700 at 2854.604 kb on - strand, within CCNA_02700 at 2854.608 kb on + strand, within CCNA_02700 at 2854.626 kb on + strand, within CCNA_02700 at 2854.639 kb on - strand, within CCNA_02700 at 2854.679 kb on - strand, within CCNA_02700 at 2854.755 kb on + strand, within CCNA_02700 at 2854.758 kb on - strand, within CCNA_02700 at 2854.799 kb on + strand at 2854.842 kb on + strand at 2854.850 kb on - strand at 2854.874 kb on + strand at 2854.874 kb on + strand at 2854.874 kb on + strand at 2854.874 kb on + strand at 2854.874 kb on + strand at 2854.874 kb on + strand at 2854.874 kb on + strand at 2854.874 kb on + strand at 2854.882 kb on - strand at 2854.882 kb on - strand at 2854.882 kb on - strand at 2854.882 kb on - strand at 2854.882 kb on - strand at 2854.882 kb on - strand at 2854.887 kb on + strand at 2854.887 kb on + strand at 2854.895 kb on - strand at 2854.895 kb on - strand at 2854.895 kb on - strand at 2854.895 kb on - strand at 2854.895 kb on - strand at 2854.895 kb on - strand at 2854.895 kb on - strand at 2854.901 kb on - strand at 2854.979 kb on + strand at 2854.985 kb on - strand at 2854.987 kb on - strand at 2855.000 kb on + strand at 2855.040 kb on - strand at 2855.068 kb on - strand at 2855.075 kb on - strand at 2855.087 kb on + strand at 2855.092 kb on + strand at 2855.151 kb on + strand at 2855.151 kb on + strand at 2855.151 kb on + strand at 2855.159 kb on - strand at 2855.159 kb on - strand at 2855.206 kb on + strand at 2855.214 kb on - strand at 2855.251 kb on - strand, within CCNA_02701 at 2855.278 kb on - strand, within CCNA_02701 at 2855.307 kb on - strand, within CCNA_02701 at 2855.343 kb on + strand, within CCNA_02701 at 2855.354 kb on + strand, within CCNA_02701 at 2855.356 kb on - strand, within CCNA_02701 at 2855.359 kb on + strand, within CCNA_02701 at 2855.361 kb on + strand, within CCNA_02701 at 2855.361 kb on - strand, within CCNA_02701 at 2855.373 kb on - strand, within CCNA_02701 at 2855.381 kb on - strand, within CCNA_02701 at 2855.409 kb on + strand, within CCNA_02701 at 2855.409 kb on + strand, within CCNA_02701 at 2855.417 kb on - strand, within CCNA_02701 at 2855.438 kb on - strand, within CCNA_02701 at 2855.443 kb on - strand, within CCNA_02701 at 2855.443 kb on - strand, within CCNA_02701 at 2855.447 kb on + strand, within CCNA_02701 at 2855.451 kb on - strand, within CCNA_02701 at 2855.521 kb on - strand, within CCNA_02701 at 2855.557 kb on + strand, within CCNA_02701 at 2855.570 kb on - strand, within CCNA_02701 at 2855.596 kb on + strand, within CCNA_02701 at 2855.650 kb on - strand, within CCNA_02701 at 2855.650 kb on - strand, within CCNA_02701 at 2855.666 kb on - strand, within CCNA_02701 at 2855.714 kb on - strand, within CCNA_02701 at 2855.726 kb on + strand, within CCNA_02701 at 2855.726 kb on + strand, within CCNA_02701 at 2855.734 kb on - strand, within CCNA_02701 at 2855.734 kb on - strand, within CCNA_02701 at 2855.752 kb on + strand, within CCNA_02701 at 2855.765 kb on + strand, within CCNA_02701 at 2855.771 kb on - strand, within CCNA_02701 at 2855.773 kb on - strand, within CCNA_02701 at 2855.773 kb on - strand, within CCNA_02701 at 2855.796 kb on + strand, within CCNA_02701 at 2855.796 kb on + strand, within CCNA_02701 at 2855.804 kb on - strand, within CCNA_02701 at 2855.811 kb on + strand, within CCNA_02701 at 2855.819 kb on - strand, within CCNA_02701
Per-strain Table
Position Strand Gene LocusTag Fraction 24 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G remove 2,853,011 + CCNA_02699 0.34 +1.4 2,853,340 + CCNA_02699 0.59 +0.8 2,853,590 - CCNA_02699 0.79 +0.1 2,853,953 + CCNA_02700 0.10 +1.2 2,853,953 - CCNA_02700 0.10 +0.3 2,853,980 + CCNA_02700 0.13 -0.0 2,853,980 + CCNA_02700 0.13 -1.3 2,853,988 - CCNA_02700 0.14 +0.4 2,853,988 - CCNA_02700 0.14 +0.6 2,853,988 - CCNA_02700 0.14 +1.3 2,853,988 - CCNA_02700 0.14 +0.6 2,853,988 - CCNA_02700 0.14 +0.2 2,853,988 - CCNA_02700 0.14 +0.4 2,853,988 - CCNA_02700 0.14 +0.5 2,853,988 - CCNA_02700 0.14 +0.3 2,853,988 - CCNA_02700 0.14 +1.3 2,853,989 + CCNA_02700 0.14 +0.8 2,854,052 - CCNA_02700 0.20 +0.2 2,854,113 + CCNA_02700 0.26 -0.3 2,854,113 + CCNA_02700 0.26 +0.8 2,854,114 - CCNA_02700 0.26 +0.5 2,854,118 + CCNA_02700 0.27 -0.4 2,854,121 - CCNA_02700 0.27 +1.1 2,854,121 - CCNA_02700 0.27 +0.3 2,854,136 + CCNA_02700 0.28 +0.2 2,854,137 + CCNA_02700 0.28 +1.0 2,854,141 + CCNA_02700 0.29 +0.4 2,854,144 - CCNA_02700 0.29 +1.2 2,854,144 - CCNA_02700 0.29 +0.5 2,854,147 + CCNA_02700 0.29 -0.4 2,854,147 + CCNA_02700 0.29 +0.2 2,854,147 + CCNA_02700 0.29 +1.0 2,854,147 + CCNA_02700 0.29 +0.2 2,854,147 + CCNA_02700 0.29 +0.8 2,854,149 - CCNA_02700 0.30 +0.0 2,854,149 - CCNA_02700 0.30 +0.2 2,854,155 - CCNA_02700 0.30 -0.3 2,854,155 - CCNA_02700 0.30 +0.3 2,854,155 - CCNA_02700 0.30 +0.8 2,854,155 - CCNA_02700 0.30 +0.2 2,854,162 + CCNA_02700 0.31 -0.2 2,854,228 - CCNA_02700 0.37 +0.1 2,854,275 - CCNA_02700 0.42 +0.3 2,854,420 + CCNA_02700 0.56 +0.9 2,854,442 - CCNA_02700 0.58 +0.1 2,854,453 + CCNA_02700 0.59 -2.0 2,854,453 + CCNA_02700 0.59 +0.8 2,854,474 + CCNA_02700 0.62 -0.5 2,854,505 + CCNA_02700 0.65 -0.8 2,854,515 - CCNA_02700 0.66 +0.5 2,854,532 - CCNA_02700 0.67 +0.0 2,854,541 - CCNA_02700 0.68 +0.3 2,854,581 - CCNA_02700 0.72 +0.1 2,854,596 + CCNA_02700 0.74 +0.2 2,854,604 - CCNA_02700 0.74 -0.2 2,854,604 - CCNA_02700 0.74 -0.2 2,854,604 - CCNA_02700 0.74 +0.3 2,854,604 - CCNA_02700 0.74 -0.7 2,854,604 - CCNA_02700 0.74 +0.8 2,854,608 + CCNA_02700 0.75 +0.0 2,854,626 + CCNA_02700 0.76 -0.3 2,854,639 - CCNA_02700 0.78 +0.3 2,854,679 - CCNA_02700 0.82 +0.7 2,854,755 + CCNA_02700 0.89 +0.7 2,854,758 - CCNA_02700 0.89 -0.6 2,854,799 + -0.3 2,854,842 + +0.8 2,854,850 - +0.5 2,854,874 + -0.3 2,854,874 + +0.7 2,854,874 + +0.0 2,854,874 + +0.8 2,854,874 + +0.5 2,854,874 + +0.3 2,854,874 + -0.5 2,854,874 + +0.4 2,854,882 - +0.5 2,854,882 - -0.6 2,854,882 - -0.0 2,854,882 - +1.0 2,854,882 - +0.5 2,854,882 - +0.1 2,854,887 + +1.3 2,854,887 + +0.9 2,854,895 - -0.0 2,854,895 - +0.3 2,854,895 - +0.4 2,854,895 - +1.2 2,854,895 - +0.7 2,854,895 - -1.0 2,854,895 - +0.2 2,854,901 - +1.0 2,854,979 + +0.9 2,854,985 - +0.3 2,854,987 - +0.3 2,855,000 + +1.2 2,855,040 - +0.5 2,855,068 - +0.7 2,855,075 - +0.1 2,855,087 + +0.1 2,855,092 + +0.3 2,855,151 + -0.2 2,855,151 + -0.4 2,855,151 + -1.9 2,855,159 - +1.0 2,855,159 - +3.4 2,855,206 + -0.2 2,855,214 - +0.2 2,855,251 - CCNA_02701 0.11 +0.1 2,855,278 - CCNA_02701 0.13 -0.2 2,855,307 - CCNA_02701 0.14 +0.1 2,855,343 + CCNA_02701 0.15 -1.0 2,855,354 + CCNA_02701 0.16 +0.1 2,855,356 - CCNA_02701 0.16 +0.5 2,855,359 + CCNA_02701 0.16 +0.4 2,855,361 + CCNA_02701 0.16 -0.4 2,855,361 - CCNA_02701 0.16 +0.7 2,855,373 - CCNA_02701 0.17 -0.0 2,855,381 - CCNA_02701 0.17 +0.7 2,855,409 + CCNA_02701 0.18 +0.4 2,855,409 + CCNA_02701 0.18 -0.1 2,855,417 - CCNA_02701 0.19 +0.2 2,855,438 - CCNA_02701 0.19 +0.1 2,855,443 - CCNA_02701 0.20 +0.5 2,855,443 - CCNA_02701 0.20 +0.2 2,855,447 + CCNA_02701 0.20 -1.2 2,855,451 - CCNA_02701 0.20 +1.0 2,855,521 - CCNA_02701 0.23 +0.4 2,855,557 + CCNA_02701 0.25 +0.7 2,855,570 - CCNA_02701 0.25 +0.3 2,855,596 + CCNA_02701 0.26 +0.6 2,855,650 - CCNA_02701 0.29 +1.8 2,855,650 - CCNA_02701 0.29 +1.2 2,855,666 - CCNA_02701 0.29 +0.4 2,855,714 - CCNA_02701 0.31 +0.6 2,855,726 + CCNA_02701 0.32 +0.3 2,855,726 + CCNA_02701 0.32 +0.9 2,855,734 - CCNA_02701 0.32 +0.7 2,855,734 - CCNA_02701 0.32 +0.3 2,855,752 + CCNA_02701 0.33 -1.6 2,855,765 + CCNA_02701 0.33 -1.7 2,855,771 - CCNA_02701 0.34 +0.4 2,855,773 - CCNA_02701 0.34 +0.5 2,855,773 - CCNA_02701 0.34 +0.7 2,855,796 + CCNA_02701 0.35 +0.2 2,855,796 + CCNA_02701 0.35 +0.6 2,855,804 - CCNA_02701 0.35 +1.5 2,855,811 + CCNA_02701 0.35 -0.9 2,855,819 - CCNA_02701 0.36 +0.5
Or see this region's nucleotide sequence