Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2814

Experiment: MoLS4 minimal media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2813 and hisD are separated by 384 nucleotideshisD and DvMF_2815 are separated by 184 nucleotides DvMF_2813: DvMF_2813 - TOBE domain protein (RefSeq), at 3,556,769 to 3,557,857 _2813 DvMF_2814: hisD - histidinol dehydrogenase (RefSeq), at 3,558,242 to 3,559,546 hisD DvMF_2815: DvMF_2815 - phosphoribosylaminoimidazole-succinocarboxamide synthase (RefSeq), at 3,559,731 to 3,560,627 _2815 Position (kb) 3558 3559 3560Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3557.293 kb on + strand, within DvMF_2813at 3557.306 kb on - strand, within DvMF_2813at 3557.361 kb on - strand, within DvMF_2813at 3557.371 kb on - strand, within DvMF_2813at 3557.454 kb on + strand, within DvMF_2813at 3557.487 kb on + strand, within DvMF_2813at 3557.504 kb on - strand, within DvMF_2813at 3557.576 kb on - strandat 3557.605 kb on + strand, within DvMF_2813at 3557.613 kb on - strand, within DvMF_2813at 3557.750 kb on - strandat 3558.145 kb on - strandat 3558.169 kb on + strandat 3558.257 kb on + strandat 3558.330 kb on + strandat 3558.798 kb on + strand, within hisDat 3558.803 kb on + strand, within hisDat 3558.822 kb on + strand, within hisDat 3559.041 kb on - strand, within hisDat 3559.339 kb on + strand, within hisDat 3559.570 kb on - strandat 3559.896 kb on + strand, within DvMF_2815at 3560.043 kb on + strand, within DvMF_2815at 3560.132 kb on - strand, within DvMF_2815at 3560.313 kb on - strand, within DvMF_2815

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 minimal media
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3,557,293 + DvMF_2813 0.48 -1.0
3,557,306 - DvMF_2813 0.49 -1.1
3,557,361 - DvMF_2813 0.54 -1.9
3,557,371 - DvMF_2813 0.55 -1.2
3,557,454 + DvMF_2813 0.63 -0.6
3,557,487 + DvMF_2813 0.66 -1.3
3,557,504 - DvMF_2813 0.67 -0.1
3,557,576 - -1.4
3,557,605 + DvMF_2813 0.77 -1.6
3,557,613 - DvMF_2813 0.78 -0.2
3,557,750 - -1.9
3,558,145 - -0.8
3,558,169 + -0.2
3,558,257 + -4.8
3,558,330 + -3.9
3,558,798 + hisD DvMF_2814 0.43 -4.2
3,558,803 + hisD DvMF_2814 0.43 -2.9
3,558,822 + hisD DvMF_2814 0.44 -3.7
3,559,041 - hisD DvMF_2814 0.61 -3.2
3,559,339 + hisD DvMF_2814 0.84 -2.4
3,559,570 - -1.1
3,559,896 + DvMF_2815 0.18 -2.3
3,560,043 + DvMF_2815 0.35 -2.5
3,560,132 - DvMF_2815 0.45 -4.1
3,560,313 - DvMF_2815 0.65 -1.2

Or see this region's nucleotide sequence